Gene CPF_0548 details

Gene Information

• Locus tag: CPF_0548
• Symbol: ribA
• ID: 4202423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 653875
• End bp: 655074
• Gene Length: 1200 bp
• Protein Length: 399 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 638081430
• Product: riboflavin biosynthesis protein RibA
• Protein accession: YP_695002
• Protein GI: 110798726
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase; [COG0807] GTP cyclohydrolase II
• TIGRFAM ID: [TIGR00505] GTP cyclohydrolase II; [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.913835
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAGT TTAATTTAGT AGAAGAGGCA ATAGAAGATA TAAAAAATGG GAAAATGGTT 
ATTGTTATTG ATGATGAGGG AAGAGAAAAT GAGGGGGATC TAGTTATGGC TGGAGAACTT 
GTTACTGGAG AAAAAATAAA TTTTATGGCT ACTTATGGAA AGGGTTTAAT ATGTGCTCCA 
GTAAGTGAGA GGATAGCTGA AAATTTAGGA TTGAATCCTA TGGTTTTAAA TAATACAGAT 
AATCATGAAA CTGCCTTTAC AGTATCTATA GATTATAAAG ATACAACTAC AGGAATATCA 
GCCTTTGAAA GGGCTCATAC AATTAAAGAA TTAATAAATG AAGAAAGTAA AGCAGAGGAT 
TTTAGAAGAC CAGGACATGT ATTCCCTTTA ATAGCTAAGA ATGGTGGCGT TTTAAAGAGA 
GCTGGGCATA CAGAGGCGGC AATTGACTTA GCAAAGTTAG CTGGATTAAA AGAAGTTGGG 
GTAATATGTG AAATAATGAA AGATGATGGA ACTATGGCTA GAACTGATGA ATTATTAGAA 
TTTGCAAATA GTCATAATAT GAAAATAATA ACTATAGAAG ATTTAATTGC TTATAGAACA 
GAAAGAGATA ATTTTGTTTA TAGAGTTGTT GAAACTAATA TGCCAACTAA ATATGGAGAG 
TTCAAGGCTA TTGGGTTTAT AGATAAACTT ACAGGAGAGC ATCATGTGGC TTTAGTTAAA 
GGAGAGATAA AATCAGAGGA GCCAGTATTA TTAAGAGTGC ATTCAGAATG CTTAACTGGA 
GATGTTTTTG GATCAAGAAG ATGTGATTGC GGAGAGCAGT TTCATAGGGC TATGGAAAAA 
ATAAATGAAG AGGGAAAAGG GATATTACTT TATATGAGAC AAGAAGGAAG AGGAATAGGT 
CTTATAAATA AGTTGAAAGC TTATAAGCTT CAAGATGAAG GATTAGATAC TGTAGAAGCT 
AATATAGCTT TAGGATTTCC AGAAGATCTT AGAGATTATG GCGTTGGAGC ACAAATTTTA 
AAAGAGTTAA GTGTAAGGGA AATCAGGTTA ATGACTAATA ATCCTAAAAA AATAACTGGC 
TTAGAGGGAT ATGGACTTAA AATAGTAGAA AGAGTACCTA TAGAAATAAA GTGTAATGAG 
GAAAATGAGT TTTATTTGAA AACTAAGAAA GAGAAAATGC ACCATTTAAT AATGCAGTAA 

 

Protein sequence

MKKFNLVEEA IEDIKNGKMV IVIDDEGREN EGDLVMAGEL VTGEKINFMA TYGKGLICAP 
VSERIAENLG LNPMVLNNTD NHETAFTVSI DYKDTTTGIS AFERAHTIKE LINEESKAED 
FRRPGHVFPL IAKNGGVLKR AGHTEAAIDL AKLAGLKEVG VICEIMKDDG TMARTDELLE 
FANSHNMKII TIEDLIAYRT ERDNFVYRVV ETNMPTKYGE FKAIGFIDKL TGEHHVALVK 
GEIKSEEPVL LRVHSECLTG DVFGSRRCDC GEQFHRAMEK INEEGKGILL YMRQEGRGIG 
LINKLKAYKL QDEGLDTVEA NIALGFPEDL RDYGVGAQIL KELSVREIRL MTNNPKKITG 
LEGYGLKIVE RVPIEIKCNE ENEFYLKTKK EKMHHLIMQ