| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0543 |
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| Symbol | treR |
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| ID | 4201449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 647019 |
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| End bp | 647726 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 638081425 |
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| Product | trehalose operon repressor |
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| Protein accession | YP_694997 |
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| Protein GI | 110799925 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02404] trehalose operon repressor, B. subtilis-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.405615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTAGTA AGTATTTAAA AATATATAAT GATATTGTTG GAAAAATAGA TAGTGGAATT
TTTGAAGCAA ATACTAAATT GCCTTCAGAA TCACAACTTA TGGATGAATA TAATGTATCT
AGGGATACTG TAAGAAAATC CTTAAATTTA TTAGAGCAAA ATGGGTATAT TGAAAAATCT
AAAGGTAAGG GATCCTTTGT ACTTGATATG AATAAATTTG ATTTTCCTGT GTCAGGTATA
AAGAGCTTTA AAGAGATTGA AAATAGCTTA GGAAAAGAGT GCGAAACTAT ATTAGAGGAA
TTAACATTAA AAAGTCCTAG TGATAGCCTT ATGAAAAAAT TAGAGGTTTC TCCTAATAAA
TATGTTTGGA GTGTAGTAAG AGTTAGAAAT ATTGATGGTG AAAAGATAAT TTTAGATAAG
GACTATTTAA ATGCAGAGTT TGTTCCAAGA CTTACAGAAG AAATATGCAA GGATTCTTTA
TATAAATATA TAGAGGGAGA ATTAGGGTTA AAAATAGCCT ATGCTGAAAA AGAGATAACA
GTACAAACTG CTACTGAGGA AGATCAAAGA CTTTTAGATT TAAGAGGATA TGATATGGTA
GCTGTGGTTA AAAGTTATAC ATATTTAGAA GGAAGAAAAT TATTTCAATA TACAGAGTCA
AGACATAGAC CAGATAAATT TAAGTTTGTA GATTTTGCAA GAAGATAG
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| Protein sequence | MSSKYLKIYN DIVGKIDSGI FEANTKLPSE SQLMDEYNVS RDTVRKSLNL LEQNGYIEKS
KGKGSFVLDM NKFDFPVSGI KSFKEIENSL GKECETILEE LTLKSPSDSL MKKLEVSPNK
YVWSVVRVRN IDGEKIILDK DYLNAEFVPR LTEEICKDSL YKYIEGELGL KIAYAEKEIT
VQTATEEDQR LLDLRGYDMV AVVKSYTYLE GRKLFQYTES RHRPDKFKFV DFARR
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