Gene CPF_0539 details

Gene Information

• Locus tag: CPF_0539
• ID: 4203505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 641467
• End bp: 642030
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 23%
• IMG OID: 638081421
• Product: RNA polymerase sigma-70 factor
• Protein accession: YP_694993
• Protein GI: 110799570
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02954] RNA polymerase sigma-70 factor, TIGR02954 family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0133113
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATAT CATATCTAGA TATAGATAGA AAAAATAAAT TAAATGAAAT TAAGTTAATA 
AAAGAATCAA TGAAAGGAAA TAAAGAATCC TTTGGAATCC TTATAAAAAA CAATAAAGAA 
TACTTATATA AAATGGCGTT TCTATATGTT AAAGATGAGC AAGATGCTCT TGAAGTTATA 
CATGAAACCG TATATAGAGC CTTTTTAAAT ATTGAAAAAT TAAAAAAAGC AAAGTTTTTT 
AACACATGGA TTACAAGAAT TTTAATAAAT GTATCAATTG ATTTTCTAAA GAAAAAAGGA 
AAAAATGAAA TGTTGGATGA AAGTACACCG ATAAGAAAAG AAAAATGTGA AATATCTACA 
GAGGAAAAGT TAGATTTATA TAATGCAATA GATTTATTAA ATGATAATTA TAAAACAGTA 
ATAATCATGA TGTACTTTAA TGATATGAAA ATAAAAGATA TCTCAAAGGT TATGGAAATT 
CCAGAAAACA CAGTTAAAAC TTATTTAAGA AGAGCAAAAC AAGCTTTAGG TGAGGTTTTA 
AAGGAGGGCT ATTTAAATGA ATAA 

 

Protein sequence

MSISYLDIDR KNKLNEIKLI KESMKGNKES FGILIKNNKE YLYKMAFLYV KDEQDALEVI 
HETVYRAFLN IEKLKKAKFF NTWITRILIN VSIDFLKKKG KNEMLDESTP IRKEKCEIST 
EEKLDLYNAI DLLNDNYKTV IIMMYFNDMK IKDISKVMEI PENTVKTYLR RAKQALGEVL 
KEGYLNE