| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0504 |
|---|
| Symbol | |
|---|
| ID | 4201760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 599856 |
|---|
| End bp | 600650 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638081386 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_694958 |
|---|
| Protein GI | 110800774 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.928419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAATT TAAAAGGAAT AGTATTTTTT GATGTAGATG GTACATTAAT TGATTGCGGC
AAAGGGCTAT ATAAACCTTC AAATAAAACT AAAGAGGCAA TTAAAAAATT AAAAGAAAAT
GGATATTTAA CAATTCTTGC AACAGGACGT CCAATGAGCT TTGTTGATGA TGGATTAAAG
GAATTAGAGT TAGATGGGTA TATAGCATCT AATGGAACAT ATATAGAGTT AAATAATGAA
GTCATTCTTA ATGATGATAT AAAATTAGAG AAATTAAAAG AGATAATGGA TTATTGCGTT
GAACATAATA TTAACTTTAT TTTAGAAGGA CAAAAAACAA GTTATGTTTT AAATAATGAT
GTGGCTAAAA AAATGGTAGA AAATTTTTCT CTTCCAGAGG AAAGTTTTAC TGGTGATTGG
ACAGAAGAGG AGCTTTCAGC AAATAAGCTT GTTATTGTTG ATAATAATAA GGATGATTTT
AAAGACATAT TTGAAAGATT TAAGGATGAA TTTGTATTTA TGCAACATCC AGGACATTCA
TCTTATGATA TGTATAGAAG AGGGTGCACA AAGGCTCATG GAATAGAACA TTTAATAAAG
GAGCTAGGAT TAAGTGATAA GGATACTTAT GCCTTTGGAG ATGGAGAAAA TGATATAGAA
ATGTTCCAAA GAGTTAAATA TGGAATAGCA ATGGGAGATG CCCATGAAAC TTTAATACCA
CATGCATATA AGCAAACAGA AAATGTTCCA AATGAAGGAA TATATAAGGC CTTATTAGAA
TTAGGCTTAA TATAA
|
|---|
| Protein sequence | MENLKGIVFF DVDGTLIDCG KGLYKPSNKT KEAIKKLKEN GYLTILATGR PMSFVDDGLK
ELELDGYIAS NGTYIELNNE VILNDDIKLE KLKEIMDYCV EHNINFILEG QKTSYVLNND
VAKKMVENFS LPEESFTGDW TEEELSANKL VIVDNNKDDF KDIFERFKDE FVFMQHPGHS
SYDMYRRGCT KAHGIEHLIK ELGLSDKDTY AFGDGENDIE MFQRVKYGIA MGDAHETLIP
HAYKQTENVP NEGIYKALLE LGLI
|
|---|
| |