| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0454 |
|---|
| Symbol | |
|---|
| ID | 4203307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 538113 |
|---|
| End bp | 540347 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638081338 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_694911 |
|---|
| Protein GI | 110801230 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.110382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA AAAAATTAAG TATTTTTATA CTATCAGCAG CGATAGTAAC AAGTTCAGTA
TCATATGGAA TGACAGCGAA AGCTGATGAG GTCAAAGAGA CTAAAGGATA TAATTACAAT
GTAAATTTAT CAGAGCAAAA AGCTGTAGCT AATAATAAAA TTTCAGTGAA AAAAGTTAAT
GGAGAAATTT TAGGCTATGC AAATCCATTT ACTATGTTAC AAATATTAAA TATGAATGGA
AAAACAGTAG AAGTAATTAC TCAAAGTGGC TTAAGAGGGT ATGTAGATGC TAATGAATTC
ACTTTAGTAG AATCTGCTGT TAATGATAAA TTAATTGAGA AAAATATAGA GGGACATGTT
ACTAATGTTT CAACAGTATT AAATTTAAGA AAAGAGCCTA GAATAGGTGC TGAAATAATA
AATAGATTAC TTAATAATAC TAAGGTTAAC ATACTTGGAA AACAAGGTTC TTGGTATAAG
ATTGAGTTAA ACGGACAAAA AGGATATGTT TATGGCATGT TCTTAAATGA AGGAACTATG
AAAGAGAATA GTTCAAAGAC TATAGCAAAC AAAAAATCAG AAGTTAAATC TGAATATAAG
AAAGAGAAAA AATCTTCAGT TAAAAAAGAA GCTAAAAAAG AGGTTGTTTC AGGGGCTAAG
GCTAAAGTAG CACAAAAGCA AAGAGAAGAA GCTAAAGCTA ATATGACTTC AGAAGTAAAA
CCAGCAATAA ACAAAGAAAC AAAATCTAAT AATAAGGTTG AAGTGAAATC AGAAGTTAAA
AAAGAGGCAA AGAATGAAGT TAAAACTGAA ATGAATTCAG TTACAAAGGC TGAAACAAAC
CAAGTAGTAA CTTCTGAAAT TGTACAAGCA GTAAAATCAG AGAAAAATCC AGAAACTAAT
CTTCAAGTAA GACCAGAGAT TAAATCTGAA GAAAAAACTG AGATGATTTC TAAAGAAAAT
TTAAATGTGA ATCCAGAAGC TAAAAAAGAG GGAATTTCAG AAGAAATAAA GCCTGAGGTT
AATACTGAGG TAGAATCTAA GCCTGAAATG AATAAAGAGG TTAAAGTTGA AGAAGCTAAA
GTAGAGGAAA AACAAGAACC TAAGCAAGAG GAAGTTCAAG ATTCTAAGGC TAAAGAAATG
GATGAACTTT TAAAAAGTGA AGAGTATAAA TTCTTAAGAA TGAGTATATC TTACGGTGAA
AGATTAGTTG ATAGAAATGA TGTATACACA AAAGACTCAT TAAAGATTTT AAGAACTGAA
TTAGCAAAAG CTAAAAAAGT ATTCCAAGAT AAAGATAATT TAACTATGAA GTTAGTTCAA
GATACAAGGG ATGATTTAGA AAGAGCTATA GTAGATTTAG TTAAGTTAAG TGATGTTAAG
AAGCCAGTTA AATCAAAAGC TAAGGTGGAA GTGAAGAAAG AGTCTAATAC TGAGAAAAAA
GAAGAAGTTA AACCTGTTGA AGCTTCAGAA GAAAAAGTAG AAGTTAAAGA AGAGCCTGTT
AAGGTAGAAG AAAAAGTAGA GGCTAAGAAA GAGGAAGTTC AAGATCCTAA GGCTAAAGAA
ATGGATGAGC TTTTAAAAAG TGAAGAGTAT AAGTTCTTAA GAATGAGTAT ATCTTACGGT
GAAAGATTAG TTGATAGAAA TGATGTATAC ACAAAAGACT CATTAAAGAT TTTAAGAACT
GAATTAGCAA AAGCTAAAAA AGTATTCCAA GATAAAGATA ATTTAACTAT GAAGTTAGTT
CAAGATACAA GAGATGATTT AGAAAGAGCT ATAGTAGATT TAGTTAAGCT AAGTGATGTT
AAGAAGCCAG TTAAATCAAA AGCTAAGGTG GAAGCTAAGA AAGAGTCTAA TACTGAGAAA
AAAGAAGAAG TTAAAGAACA ACCAGCTAAG GTTGAAGTAA TAGTTCCAGA AGTGAAGGAA
AATAAAGAGA TTAAGAAAGA GGAGCCAGTT AAAGCTAAAG AAGTAGTTAA AGAGAAGAAA
TCTAGAGAAG AAGAAATAGA AGAGATTCTA AAAAGTGAAG AATATAGATT TTTATTAAAA
GATATAGCTT ATGGTGAAAG ATTATCTGAG AAAATTACTG TTTACACAAG AGATTCATTA
AAAGTATTAA ATGCTGCCAT AGAAAAAGCT GGAAGAATAG TTAGACAAAA AGAAAAATTA
ACTGTAAAAT TAGTTCAAGA TACAAGAGAT GATGTAGATA GAGCTATAGT AGATTTAGTT
AAAAAAAATA ATTAA
|
|---|
| Protein sequence | MKRKKLSIFI LSAAIVTSSV SYGMTAKADE VKETKGYNYN VNLSEQKAVA NNKISVKKVN
GEILGYANPF TMLQILNMNG KTVEVITQSG LRGYVDANEF TLVESAVNDK LIEKNIEGHV
TNVSTVLNLR KEPRIGAEII NRLLNNTKVN ILGKQGSWYK IELNGQKGYV YGMFLNEGTM
KENSSKTIAN KKSEVKSEYK KEKKSSVKKE AKKEVVSGAK AKVAQKQREE AKANMTSEVK
PAINKETKSN NKVEVKSEVK KEAKNEVKTE MNSVTKAETN QVVTSEIVQA VKSEKNPETN
LQVRPEIKSE EKTEMISKEN LNVNPEAKKE GISEEIKPEV NTEVESKPEM NKEVKVEEAK
VEEKQEPKQE EVQDSKAKEM DELLKSEEYK FLRMSISYGE RLVDRNDVYT KDSLKILRTE
LAKAKKVFQD KDNLTMKLVQ DTRDDLERAI VDLVKLSDVK KPVKSKAKVE VKKESNTEKK
EEVKPVEASE EKVEVKEEPV KVEEKVEAKK EEVQDPKAKE MDELLKSEEY KFLRMSISYG
ERLVDRNDVY TKDSLKILRT ELAKAKKVFQ DKDNLTMKLV QDTRDDLERA IVDLVKLSDV
KKPVKSKAKV EAKKESNTEK KEEVKEQPAK VEVIVPEVKE NKEIKKEEPV KAKEVVKEKK
SREEEIEEIL KSEEYRFLLK DIAYGERLSE KITVYTRDSL KVLNAAIEKA GRIVRQKEKL
TVKLVQDTRD DVDRAIVDLV KKNN
|
|---|
| |