| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0357 |
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| Symbol | rumA |
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| ID | 4201659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 427075 |
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| End bp | 428442 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638081241 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_694814 |
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| Protein GI | 110800984 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.820235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGAAA AGAATAAAGA ATATATTTTT GATATAATCT CTCAAGGATA TGAGGGTGAA
GGAATAGCTA AAATTGATAA TAAATACCCA ATTTTCATTG AGGGAGCTTT AAAGGGCGAA
AAAGTTAAAG TAAGAATAGT TAAGGTTAAT AAAAATTTTG CCTATGGAAA ACTTATGGAA
GTATTAGAAG CTTCAGAGGA AAGAGTTAAT CCCCCTTGTG CTATTTATAA AAGATGTGGT
GGATGTAAAC TTCAGCACGC TTCTTACAAG GCACAATTAG ATTTTAAATG GGATAGAGTT
AAGGACTGTG TTAGCAAGAT TGGAAAGTTA GATCCTAGCA TAGTTAAATA TCCTTTAGGA
ATGGAAGAGC CTTGGAGATA TAGAAATAAG GTTCAGTTAC CAATAGGGTT AATTAATGGA
GAGGTTAAAA TAGGATTCTT TGCTCCAAGA AGTCATGATA TTATCGACAT GGAATCTTGC
TTAATTCAAG ATGAAATAGG AGATAAGGTT GTTAAACTTA CTAGAGAGTG GATAGAGAAA
TTTAATATAA GACCATATAA TGTAGATGGT GAGTATGATG AAAAGGGAAT AGTAAGACAC
ATAATGATAA GAAGAGGTTT TACAACTAAT GAGGTTATGG TTGTCTTAGT TACAAATGGA
GAAAAACTTC CTCATAAAGA AGAGTTTGTA GACTTAATGG TTAAAAATAT TCCTGGAATA
AAGAGTGTTA TACAAAATAT AAACTCAAAG AAAACTAATG TAATATTAGG TTTAGAAAGT
AAAACTCTAT GGGGAGAAGA TACAATATCA GATTACATAG GAGACTTTAG ATTCAACATA
TCTCCATTAT CATTCTTCCA AGTAAATCCT ACTCAAACAG AGGTTTTATA TGGTAAGGCT
TTAGAATATG CAAATCTTAC AGGAAATGAA GAGGTATTTG ATGCATACTG TGGAACAGGA
ACAATAACAT TATTCCTATC ACAAAAGGCT AAAAAAGTTT ATGGAGTAGA AATAATTCCA
CAGGCCATAG ATAACGCTTG GATAAATGCA AAGGAAAATA AAGTAGAGAA TGTAGAATTC
TTCGTTGGAG AATCAGAAGT GGTGATTCCA GACTTAATAA ATAAGGGAGT AAAAGCTGAT
GTGGTAGTAG TAGATCCACC AAGAAAAGGA TGCGATAAAA AATTACTAGA TGCCATAACA
AATATAAATG CTAAAAAAAT AGTATATGTA AGCTGTGATC CAAGTACCTT AGGAAGAGAT
CTAGCAATAT TAGAAGAGAA TGGCTATAAA ACTTTAGAAG TTCAACCAGT GGATATGTTT
CCTAATACAT CTCACGTAGA AAATGTAGCT AAGTTAATAA AAAAATAA
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| Protein sequence | MVEKNKEYIF DIISQGYEGE GIAKIDNKYP IFIEGALKGE KVKVRIVKVN KNFAYGKLME
VLEASEERVN PPCAIYKRCG GCKLQHASYK AQLDFKWDRV KDCVSKIGKL DPSIVKYPLG
MEEPWRYRNK VQLPIGLING EVKIGFFAPR SHDIIDMESC LIQDEIGDKV VKLTREWIEK
FNIRPYNVDG EYDEKGIVRH IMIRRGFTTN EVMVVLVTNG EKLPHKEEFV DLMVKNIPGI
KSVIQNINSK KTNVILGLES KTLWGEDTIS DYIGDFRFNI SPLSFFQVNP TQTEVLYGKA
LEYANLTGNE EVFDAYCGTG TITLFLSQKA KKVYGVEIIP QAIDNAWINA KENKVENVEF
FVGESEVVIP DLINKGVKAD VVVVDPPRKG CDKKLLDAIT NINAKKIVYV SCDPSTLGRD
LAILEENGYK TLEVQPVDMF PNTSHVENVA KLIKK
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