Gene CPF_0300 details

Gene Information

• Locus tag: CPF_0300
• Symbol: uvrB
• ID: 4202558
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 355704
• End bp: 357683
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 638081187
• Product: excinuclease ABC subunit B
• Protein accession: YP_694760
• Protein GI: 110799055
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0556] Helicase subunit of the DNA excision repair complex
• TIGRFAM ID: [TIGR00631] excinuclease ABC, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGAAT TTAAAATACA ATCAAAATTT AAACCTACAG GGGATCAGCC TAAAGCAATA 
GATACTTTAG TTCAGTCTAT TGAAAATGGT AATAGAGGGC AAACTCTTTT AGGAGTTACA 
GGATCAGGAA AAACATTCAC TATGGCAAAT ATCATAGAAA GAACTCAAAA ACCAACCCTT 
ATTTTAGCTC ATAATAAGAC ATTGGCAGCT CAACTTTGTG CTGAATTTAA GGAATTCTTT 
CCCGACAATA TAGTAGAATA TTTTGTTTCA TATTATGATT ATTATCAACC AGAGGCTTAT 
GTGCCTCAAA CAGATACTTT TATAGAGAAG GATGCATCTA TTAATGACGA GATTGATAAA 
CTTCGTCACT CAGCTACTTC TGCACTTTTA GAGAGAAGAG ATGTAATAAT AGTTGCTTCA 
GTTTCTTGCA TATATGGACT TGGTAATCCA GAAGAGTATA AAAAGCTTAC AATATCTTTA 
AGACCAGGTA TGATTAAAGA TAGGGATGAA GTTATTAAGA AACTTATAGA AATACAATAT 
GAAAGAAATG ACATAGACTT TGCAAGGGGA ACATTTAGAG TAAGAGGAGA TAATTTAGAT 
ATAATTCCTT CATCTTCCTC TTCTAAGGGT ATTAGAATTG AGTTCTTTGG AGATGAAATA 
GATAGAATAA GAGAGTTTGA TGTTCTTACA GGAAATATAA TTGGAGAAAG ACAACATGTT 
AGTATAACTC CAGCGTCTCA CTTTGCTGCC TCTGAGGAAA CCTTAGAAAA ATCAATAAGG 
GTAATAGAAG ATGAACTTGA AGATAGATTA AAAGTTCTTA CAGCTGAGGA TAAAATATTA 
GAGGCACAAA GGTTAAAGCA GAGAACAAAT TATGATATAG AAATGATTAG AGAAATGGGA 
TATTGCCAAG GAATAGAGAA CTATTCAAGA ATATTAGATG GAAGAATGCC AGGAACTCCA 
CCTCAAACTT TACTTGATTA TTTCCCAGAG GATTTCTTAA TGTTTATAGA TGAAAGCCAT 
GTTACACTAC CTCAAGTTAG GGCAATGTAT GCTGGGGATA GATCTAGAAA GACATCTTTA 
GTTGAGTTTG GATTTAGACT ACCTTGTGCA TTTGATAATA GACCTCTTAA ATTTAGTGAA 
TTTGAAAGCA AAATAAATCA AGTAGTCTTT GTAAGTGCTA CTCCAGGAGA GTATGAACTA 
GATCATTCTA AAGTGGTAGC AGAACAAATA ATAAGACCTA CAGGACTTTT AGATCCTGTA 
ATTGAAATAA GACCTATACA GGGACAAATT GATGATCTTT ATGGTGAGAT TCAAAGAACT 
GTACAAAGAG GATTTAGAGT TCTTATAACA ACTCTTACAA AGAGAATGGC TGAGGATTTA 
ACAAAGTATC TAAAAGACTT AAATGTTAAA GCTACATACA TGCATTCAGA TATAGATACC 
TTAGAAAGAA TGAAGATAAT AAGAGAACTT AGACTTGGAG AGGTTGATGT ATTAATAGGT 
ATAAACCTTT TAAGGGAAGG TTTAGATATA CCTGAGGTTG CTTTAGTTGC AATATTGGAT 
GCTGATAAAG AGGGATTTTT AAGATCTGAA ACTTCCTTAA TACAAACTAT AGGTAGAGCC 
GCTAGAAACT CAGAAAGTAA AGTAATAATG TATGCAGATA ATATTACAAA ATCTATGGAT 
AAGTCTATTA AGGAAACTGA AAGAAGAAGA GTTATTCAAA TGGAGTATAA TGAAGAACAT 
AATATTACCC CTACTACTGT AATAAAAGGA GTTAGGGATA TAATTGAAGC TACTAAGGTT 
TCAGAAGAAA AAGAAAACTA TGAAGATGAA GTTAAAAAGG CAGCTAAGAA AGATATTCCA 
GTAGAAAAAC TTATAGAGCA ATATGAGGAA GAAATGAAGG AAGCAGCTAA GAATCTTCAA 
TTTGAAAGAG CTGCTGAACT TAGAGATATA ATAAAAGATT TAAAAGAAAA CTCTAAATAA 

 

Protein sequence

MGEFKIQSKF KPTGDQPKAI DTLVQSIENG NRGQTLLGVT GSGKTFTMAN IIERTQKPTL 
ILAHNKTLAA QLCAEFKEFF PDNIVEYFVS YYDYYQPEAY VPQTDTFIEK DASINDEIDK 
LRHSATSALL ERRDVIIVAS VSCIYGLGNP EEYKKLTISL RPGMIKDRDE VIKKLIEIQY 
ERNDIDFARG TFRVRGDNLD IIPSSSSSKG IRIEFFGDEI DRIREFDVLT GNIIGERQHV 
SITPASHFAA SEETLEKSIR VIEDELEDRL KVLTAEDKIL EAQRLKQRTN YDIEMIREMG 
YCQGIENYSR ILDGRMPGTP PQTLLDYFPE DFLMFIDESH VTLPQVRAMY AGDRSRKTSL 
VEFGFRLPCA FDNRPLKFSE FESKINQVVF VSATPGEYEL DHSKVVAEQI IRPTGLLDPV 
IEIRPIQGQI DDLYGEIQRT VQRGFRVLIT TLTKRMAEDL TKYLKDLNVK ATYMHSDIDT 
LERMKIIREL RLGEVDVLIG INLLREGLDI PEVALVAILD ADKEGFLRSE TSLIQTIGRA 
ARNSESKVIM YADNITKSMD KSIKETERRR VIQMEYNEEH NITPTTVIKG VRDIIEATKV 
SEEKENYEDE VKKAAKKDIP VEKLIEQYEE EMKEAAKNLQ FERAAELRDI IKDLKENSK