| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0298 |
|---|
| Symbol | |
|---|
| ID | 4203821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 353027 |
|---|
| End bp | 354313 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638081185 |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_694758 |
|---|
| Protein GI | 110800692 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.201307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCA ATAAGGATGA AAAAAATAAA TATAATAATA TTATTAAAAA TCTTAAGAAG
AAAAAAGGAT TCAGAGCTTT AGCCATAGGT GTTGCCTTAA CTTTAATAAT TGGTGTTTCT
GTATATGCAG GGAATAGATT AACTGCCTTT GGTATTTTAC CTATAACTAG TGTAAGTGCA
GTTCAATCTT CCTTAGAAAA GGTAAATGAT ACAGAAAATT TTAAAAAGGT ATTAGAAGTA
AGGGAAATGC TTTATAGATG GTATGATGGA GATATTGATG ATAGTAAATT AGCTGAAGGT
GCTATAAAGG GTATGGTTTC ATCTTTAGGT GATCAATACA CATATTATAT GAATGAAAAA
GAATTTTCAG ATTTTAAAGA AAAAAGTCAA GGAAACTACA TGGGAATTGG GATTCAAGTA
GCTGTTAAGG ATGGTAAGAT AGTAGTAATT TCTCCTATTC AAGGAGGGCC AGCTGAAAAA
GCAGGAATAA AAACTGGAGA TATTATCTTA AAAGTAAATG GAGAACCAGT TTCAGGAAAT
GAATTGGATA AAGCCGTTTC AATGATGAAG GGTACTACAA AAGAAAATAT AAAATTAACA
TTATATAGAG AAGGTAAAGG CGAATTTGAC GTTGATGTTA TGAGAGATGT AATTAAAACA
GTTAACGTTA AAAGTGAAAT GATTGATGGA GATATTGGAT ATATAGAAGT TTTAGCTTTT
GATGAGGGAA CAGCTAAAGA CTTTGAAACT CAATTAAAAG CTTTAGAAGA GAAAGGTATG
AAGGGGTTAA TCCTTGATTT AAGAGGAAAT CCAGGAGGAT TTATGAAAGA ATGTGTAGAC
CTAGTATCAA ACTTTGTTCC AAAGGATAAG GTTATAGTGT CTACAATAGA TAAGTATGGT
AATAAAGAGG AAAGTGTATC TAAGGGCGGA ATTGCACAGG GAATGCCTTT AGTAGTTTTA
ATTGATGGAG GTACTGCTTC TGCCTCAGAA ATAGTTGCGG GAGCTATTAG AGATTATGAT
TTAGGAACTC TAGTTGGAAC AACATCCTTT GGTAAAGGAA TAGTTCAAGT TGTTTTAGAT
AAGATAGGTC AAGAAAAAGA TGGTACAGCT TTAAAGGTAA CTATTTCAAA ATACTATACT
CCAAATGGAG AAAATATTCA CAAAAAGGGT ATAGGACCAG ATGTTACAGT TGAATATTCA
AAAGAGCTTA AAGAAAAGAC ATATTCAAGA AGTACTGATC CTCAATTTGA AAAAGCCTTA
GAAATCATAC AAGAAAAGAT AAAATAA
|
|---|
| Protein sequence | MSRNKDEKNK YNNIIKNLKK KKGFRALAIG VALTLIIGVS VYAGNRLTAF GILPITSVSA
VQSSLEKVND TENFKKVLEV REMLYRWYDG DIDDSKLAEG AIKGMVSSLG DQYTYYMNEK
EFSDFKEKSQ GNYMGIGIQV AVKDGKIVVI SPIQGGPAEK AGIKTGDIIL KVNGEPVSGN
ELDKAVSMMK GTTKENIKLT LYREGKGEFD VDVMRDVIKT VNVKSEMIDG DIGYIEVLAF
DEGTAKDFET QLKALEEKGM KGLILDLRGN PGGFMKECVD LVSNFVPKDK VIVSTIDKYG
NKEESVSKGG IAQGMPLVVL IDGGTASASE IVAGAIRDYD LGTLVGTTSF GKGIVQVVLD
KIGQEKDGTA LKVTISKYYT PNGENIHKKG IGPDVTVEYS KELKEKTYSR STDPQFEKAL
EIIQEKIK
|
|---|
| |