| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0213 |
|---|
| Symbol | |
|---|
| ID | 4201811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 262491 |
|---|
| End bp | 263378 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638081097 |
|---|
| Product | putative iron chelate uptake ABC transporter, solute-binding protein |
|---|
| Protein accession | YP_694676 |
|---|
| Protein GI | 110799242 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03659] heme ABC transporter, heme-binding protein isdE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTTTAA AAAAGGGTAT AGCTTTAAGT TTAATATGCC TTTTAGGCTT TGGAGTTATG
GGATGTTCAA ATAACTCTGG AGAATCAAAG GAAAGTTTAA AAAAAGAAAA TGGAGAAGAG
ATTGTTGTGG CAACCTCTGT TGCTGTAACA GAAATATTAG ATGAATTAGG AGTAAAGGTA
AGTGGAGTTC CAACTAGTTC TTATGATTTG CCTGAAAGTA CTAAAGATGC GGTTAAAGTT
GGTAATCCCA TGAATCCAGA TTTAGAAATA ATAAAATCTT TAAATCCAGA TGTTGTAGTA
TCTGTAGATA CCTTAGGAGA AGATTATAAA AAACTATTTA CTGATAACAA TATACCTAGT
GAATTTATAG ATTTAACTAC ATTAGAAGGA TTAAAAACAA GTATATCAAC TTTAGGTGAA
AGATTTAATA AGACAGAAAA AGCAAATGAA ATATTAAATG AGCTTAAAGT TAAGGAAGAT
GAGTTTGTGA ACTTATCTAA AGAAGAAAAA AAGAATGTTT TATTAGTATT TGCAGCACCA
GGAAGCATGA TGATTGCTAC TCCTTCATCA TACATAGGAA ACTTAGTGGA TAAGGTGGGA
GCAAATAACA TAGTTAAAGA TGATAAAAAG CCATTTGTTT CATATAGCAA TGAAGAAATA
GTAAAGCTAA ATCCAGATAT GGTATTAGTT ATGACTCATG GAATGCCTGA ACAAGCTAAA
AAAATGGCTG AAGAAAAATT TGCTTCAGAT CCAGCCTGGA GCAGAATTGA AGCTGTTAAA
GAAGGAAAGG TCTATTACTT AGAAAACGGG TACTTTGGTA TGAGTGCAAA CCTAAAAGTA
ATAGAATCTT TAGATAAGTT AGGTGAAATA ATATATGGTG AAAAATAA
|
|---|
| Protein sequence | MFLKKGIALS LICLLGFGVM GCSNNSGESK ESLKKENGEE IVVATSVAVT EILDELGVKV
SGVPTSSYDL PESTKDAVKV GNPMNPDLEI IKSLNPDVVV SVDTLGEDYK KLFTDNNIPS
EFIDLTTLEG LKTSISTLGE RFNKTEKANE ILNELKVKED EFVNLSKEEK KNVLLVFAAP
GSMMIATPSS YIGNLVDKVG ANNIVKDDKK PFVSYSNEEI VKLNPDMVLV MTHGMPEQAK
KMAEEKFASD PAWSRIEAVK EGKVYYLENG YFGMSANLKV IESLDKLGEI IYGEK
|
|---|
| |