| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0206 |
|---|
| Symbol | |
|---|
| ID | 4203310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 251689 |
|---|
| End bp | 252912 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638081090 |
|---|
| Product | putative nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_694669 |
|---|
| Protein GI | 110801233 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.700221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATAC TTCACACTGC TGATTGGCAT TTAGGAAAAA ATTTAGAAGG ATTAAGTCGT
ATGGATGAGC AAGAACGATT TTTAGAGGAT TTTGTTCACA TAGTAAAGGA TAATAATATA
GATTTAGTTA TTATAGCAGG GGATGTATAT GATTCTAGTA ATCCTCCAGC TAGGGCAGAA
AAAATGTTTT ATGATACCTT AAAAAAGATA TCAGCTAATG GAGAGAGGAT GACTTTAGTT
ATTTCAGGGA ACCATGATAA TCCAGAAAGA TTAGTGGCTG CAGGTCCCTT AGCAAGAGAA
CATGGTATAG TGATGGTTGG AACTCCTAAG AGTATAGTTG AAGTAGGGGA ATATGGAAGA
AATAAAGTTT TAAATTCAGG AGAAGGATTT ATTGAATTAG ATATAAATGG AGAAAAGTCT
GTAATATTAA CTGTTCCATA TCCAAGTGAA AAGAGATTAA ATGAAGTTTT ATATGGTGCA
ATGGATGAAA CTTGTGAGAG AATAAAAAGT TATAGTGATA GAATAAAGCT TTTATTTGAT
TCTCTTAAAG GAAATTTTAA AGAGGATACA ATTAATTTAG TGGTATCTCA TCTTTTTGCA
ACGGGAGCAG AAAATACTGG TTCAGAGAGA AATATAGAGC TTGGAGGAAG TTTCATTGTT
GATAAGGAAT GTTTCCCAGA AGAAGCTCAA TATATTGCTT TAGGACATAT ACACAAGCCT
ATGATTCTAC CAGGAACTAA TAAAAAGATA AGATATGCAG GTTCACCACT TCAATATAAT
AAAAAAGAAA TAAGCTTTGA AAAAAAGTGT TTTATTGTAG ATGTTAAAGC AAATGAGGAA
GCAAATATAG ATGAAATAAA ATTTGATGTG TACAAGCCTA TAGAAGTTTG GAAGTGTGAT
AGCATAGATG AAGCCATTTA CAAATGTGAA GAAAATAAAG ATAGAGAATG TTGGGTTTAT
TTAGAAATAA AAACAGATAG ATATATAAGA GAAGATGAAA TAAAGGCCAT GAAGAAGCTT
AAAGGGGATA TTATTGAAAT TATTCCTAAG ATAACACTAG ATGAAGAGGA GAATGATGAA
AGAAGTTTTT CAGAAAAATC TTTTGAAGAA TTATTCACTG ACTTTTATGA AAAGGAAAGA
GGGGTTAAGC CAGAGGAAGA TTTATTAGAG CTTTTACTTA ATATAGTTAA AGAGGAAGGG
GATGAAGAAA ATGAAACCAA TTAG
|
|---|
| Protein sequence | MRILHTADWH LGKNLEGLSR MDEQERFLED FVHIVKDNNI DLVIIAGDVY DSSNPPARAE
KMFYDTLKKI SANGERMTLV ISGNHDNPER LVAAGPLARE HGIVMVGTPK SIVEVGEYGR
NKVLNSGEGF IELDINGEKS VILTVPYPSE KRLNEVLYGA MDETCERIKS YSDRIKLLFD
SLKGNFKEDT INLVVSHLFA TGAENTGSER NIELGGSFIV DKECFPEEAQ YIALGHIHKP
MILPGTNKKI RYAGSPLQYN KKEISFEKKC FIVDVKANEE ANIDEIKFDV YKPIEVWKCD
SIDEAIYKCE ENKDRECWVY LEIKTDRYIR EDEIKAMKKL KGDIIEIIPK ITLDEEENDE
RSFSEKSFEE LFTDFYEKER GVKPEEDLLE LLLNIVKEEG DEENETN
|
|---|
| |