Gene CPF_0180 details

Gene Information

• Locus tag: CPF_0180
• ID: 4202278
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 214476
• End bp: 214928
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 638081061
• Product: hypothetical protein
• Protein accession: YP_694644
• Protein GI: 110799028
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2731] Beta-galactosidase, beta subunit
• TIGRFAM ID: [TIGR00022] uncharacterized protein, YhcH/YjgK/YiaL family

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATATTCG GCAATTTAAT AAACTTAGAA AGTTATGATT ATCTACCAAA ACTTGTTAAG 
GAAGCTTTAC TACATGCAAA AAATAATAAT GTAATAGAGT TTGAACCAGG TACTCATGAA 
ATAAAAGGCG AAGAGTTGTT CTTTAATAGA GTTAATTACA CTACAAAAAA TAAGGAAGAT 
CGTTTTTGGG AAGGTCATAA AAAATATATA GATGTTCATG TGGTTTTTAG TGGAAGAGAA 
AGAATAGATC TTAACTTTAA AGAAAATTTA GAGTTTAAAG AGTTTGTTGA AAAAGATGAT 
TTCTTATCTT TTGATGGCAA AGAAAATTCT ACAGTTGTTT TAGAAGAAGG AGATTTCCTT 
ATCTGTTATC CAGAAGATAT ACACATGACT TGTTTAAAGG CTGATAATGA GCCTTCAGAT 
GTAAAGAAAG CTATTTATAA AGTAATTTTA TAG 

 

Protein sequence

MIFGNLINLE SYDYLPKLVK EALLHAKNNN VIEFEPGTHE IKGEELFFNR VNYTTKNKED 
RFWEGHKKYI DVHVVFSGRE RIDLNFKENL EFKEFVEKDD FLSFDGKENS TVVLEEGDFL 
ICYPEDIHMT CLKADNEPSD VKKAIYKVIL