Gene CPF_0166 details

Gene Information

• Locus tag: CPF_0166
• Symbol: colA
• ID: 4201122
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 197623
• End bp: 200937
• Gene Length: 3315 bp
• Protein Length: 1104 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 638081047
• Product: collagenase
• Protein accession: YP_694630
• Protein GI: 110798785
• COG category: [R] General function prediction only
• COG ID: [COG3291] FOG: PKD repeat

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA ACTTAAAAAG GGGAGAGCTA ACGAAACTAA AGTTAGTTGA AAGATGGTCA 
GCTACCTTTA CTTTAGCAGC ATTTATTTTA TTTAATAGCT CGTTTAAAGT ATTTGCAGCT 
GATAAAAAAA TAGAGAATAG TAATAATGGA CAGATTACTA GAGAGATTAA TGCTGATCAG 
ATTTCTAAAA CAGAATTAAA TAATGAGGTA GCTACAGACA ATAATAGACC ATTAGGCCCT 
AGTATTGCTC CATCAAGAGC AAGAAACAAC AAGATCTATA CATTCGATGA ACTTAACAGA 
ATGAATTATA GTGATCTAGT TGAATTAATA AAAACAATAA GTTATGAAAA CGTACCAGAC 
TTATTTAATT TTAATGATGG TTCATATACT TTCTTTAGTA ATAGAGATCG TGTACAAGCT 
ATAATATATG GTCTAGAGGA TAGTGGAAGA ACTTATACAG CAGATGATGA TAAGGGAATT 
CCAACTTTAG TTGAGTTTTT AAGAGCTGGA TATTATTTAG GATTTTACAA TAAACAATTA 
TCATACCTAA ATACACCACA GTTAAAAAAT GAGTGTTTAC CAGCTATGAA AGCGATTCAA 
TATAATAGTA ATTTTAGATT AGGAACAAAG GCGCAAGATG GAGTTGTTGA GGCTTTAGGA 
AGACTTATAG GTAATGCTTC AGCAGATCCA GAAGTTATTA ATAATTGCAT ATATGTCTTA 
AGTGATTTTA AAGATAATAT AGATAAGTAT GGTTCGAACT ATAGCAAGGG AAATGCAGTA 
TTCAACCTTA TGAAAGGTAT TGATTATTAC ACTAATTCAG TAATATACAA TACTAAGGGA 
TATGATGCTA AAAACACTGA GTTTTATAAT AGAATAGATC CATATATGGA AAGATTAGAA 
AGTTTATGTA CAATAGGTGA TAAGTTAAAT AATGATAATG CTTGGTTTGT AAATAATGCC 
TTATATTACA CAGGTAGAAT GGGTAAGTTT AGAGAAGACC CATCAATATC TCAAAGAGCT 
TTAGAAAGAG CTATGAAGGA GTATCCTTAT TTATCATATC AATATATTGA AGCTGCCAAT 
GATTTAGATT TAAATTTTGG TGGCAAAAAT TCATCAGGAA ATGATATAGA TTTCAATAAG 
ATAAAAGCAG ATGCAAGGGA AAAATATCTT CCAAAAACAT ATACTTTTGA TGATGGCAAA 
TTTGTAGTAA AAGCTGGTGA TAAAGTAACA GAAGAAAAGA TAAAAAGATT ATACTGGGCT 
TCAAAGGAAG TTAAGGCTCA ATTTATGAGA GTAGTTCAAA ATGATAAGGC TTTAGAAGAG 
GGAAATCCAG ATGATATTTT AACTGTTGTT ATTTATAACT CACCAGAAGA GTATAAGTTA 
AATCGTATAA TAAATGGATT TAGTACTGAT AATGGTGGTA TATATATTGA AAACATAGGA 
ACTTTCTTTA CTTATGAAAG AACACCAGAG GAAAGTATAT ATACATTAGA AGAATTATTC 
CGTCATGAAT TTACTCACTA TCTTCAAGGT AGATATGTAG TTCCTGGAAT GTGGGGACAA 
GGAGAATTCT ATCAAGAGGG AGTTTTAACT TGGTATGAAG AAGGAACAGC AGAGTTCTTT 
GCAGGTTCAA CTAGAACTGA TGGAATAAAA CCAAGAAAAT CAGTTACACA AGGATTAGCT 
TACGATAGAA ATAATAGGAT GTCTTTATAT GATGTATTAC ATGCTAAATA TGGCTCATGG 
GATTTCTATA ATTATGGATT TGCTTTATCA AACTACATGT ACAACAATAA CATTGGAATG 
TTTAATAAGA TGACAAATTA CATAAAGAAT AATGATGTAT CTGGTTATAA AGATTATATT 
GCATCAATGA GTAGTGATTA CGGATTAAAT GATAAATATC AAGACTATAT AGATTCTTTA 
TTAAATAATA TTGACAACTT AGATGTTCCT TTAGTTTCAG ATGAATATGT AAATGGACAT 
GAAGCTAAGG ATATAAATGA AATAACTAAT GATATAAAAG AAGTTTCAAA TATAAAAGAT 
CTTTCTAGTA ATGTTGAAAA GTCTCAATTC TTTACTACTT ACGATATGAG AGGAACATAT 
GTAGGGGAAA GAAGCCAAGG GGAAGAAAAT GACTGGAAAG ATATGAATTC TAAGTTAAAT 
GATATATTAA AAGAATTATC TAAAAAGAGC TGGAATGGGT ATAAAACTGT TACTGCATAC 
TTTGTAAACC ATAAAGTAGA TGAAAATGGT AACTATGTTT ATGATGTTGT ATTCCATGGA 
ATGAATACAG ATACAAATAC TGATGTTCAT GTAAATAAAG AGCCTAAGGC TGTTATAAAA 
TCTGATTCTT CAGTAATAGT TGAAGAAGAA ATAAACTTTG ATGGAACAGA GTCAAAAGAT 
GAAGATGGTG AAATTAAAGC TTATGAATGG GACTTTGGAG ATGGAGAAAA ATCTAATGAG 
GCTAAAGCTG CTCATAAATA TAATAAAACT GGAGAATATG AAGTAAAATT AACAGTTACA 
GATAATAACG GTGGAATAAA TACTGAAAGT AAAAAGATAA AAGTAGTAGA AGATAAACCT 
GTTGAAGTTA TAAATGAAAG CGAGCCTAAC AATGATTTTG AAAAGGCTAA CCAAATAGCT 
AAATCTAATA TGTTAGTTAA GGGTACTTTA TCAGAAGAGG ATTATTCAGA TAAATATTAT 
TTTGATGTAG CTAAAAAAGG CAATGTTAAA ATCACTCTTA ATAATTTAAA TTCAGTAGGA 
ATAACTTGGA CACTTTATAA AGAGGGAGAC CTAAACAATT ATGTTTTATA TGCAACTGGA 
AATGATGGAA CAGAATTAAA GGGTGAAAAG ACTTTAGAGC CTGGAAGATA CTACTTAAGT 
GTATATACTT ATGATAATCA ATCAGGAGCT TACACAGTAA ATGTAAAAGG AAAACTTAAA 
AATGAAGTTA AAGAAACAGA AAAGGATGCT ATAAAAGAAG TTGAAAATAA CAATGATTTT 
GATAAAGCTA TGAAGGTAGA TAGTAATAGC AAAATAGTTG GAACATTAAG CAATGATGAT 
CTTAAGGATA TTTATAGCAT AGATATACAA AATCCAAGTG ACTTAAACAT AGTAGTTGAA 
AACTTAGATA ATATAAAAAT GAACTGGTTA TTATATTCAG CTGATGATTT AAGTAACTAT 
GTGGATTACG CTAACGCAGA TGGAAATAAA TTAAGTAACA CTTGTAAGTT AAATCCAGGT 
AAATATTACT TATGTGTTTA TCAATTTGAA AACTCAGGTA CTGGAAATTA CACAATAAAC 
TTACAAAACA AATAA 

 

Protein sequence

MKKNLKRGEL TKLKLVERWS ATFTLAAFIL FNSSFKVFAA DKKIENSNNG QITREINADQ 
ISKTELNNEV ATDNNRPLGP SIAPSRARNN KIYTFDELNR MNYSDLVELI KTISYENVPD 
LFNFNDGSYT FFSNRDRVQA IIYGLEDSGR TYTADDDKGI PTLVEFLRAG YYLGFYNKQL 
SYLNTPQLKN ECLPAMKAIQ YNSNFRLGTK AQDGVVEALG RLIGNASADP EVINNCIYVL 
SDFKDNIDKY GSNYSKGNAV FNLMKGIDYY TNSVIYNTKG YDAKNTEFYN RIDPYMERLE 
SLCTIGDKLN NDNAWFVNNA LYYTGRMGKF REDPSISQRA LERAMKEYPY LSYQYIEAAN 
DLDLNFGGKN SSGNDIDFNK IKADAREKYL PKTYTFDDGK FVVKAGDKVT EEKIKRLYWA 
SKEVKAQFMR VVQNDKALEE GNPDDILTVV IYNSPEEYKL NRIINGFSTD NGGIYIENIG 
TFFTYERTPE ESIYTLEELF RHEFTHYLQG RYVVPGMWGQ GEFYQEGVLT WYEEGTAEFF 
AGSTRTDGIK PRKSVTQGLA YDRNNRMSLY DVLHAKYGSW DFYNYGFALS NYMYNNNIGM 
FNKMTNYIKN NDVSGYKDYI ASMSSDYGLN DKYQDYIDSL LNNIDNLDVP LVSDEYVNGH 
EAKDINEITN DIKEVSNIKD LSSNVEKSQF FTTYDMRGTY VGERSQGEEN DWKDMNSKLN 
DILKELSKKS WNGYKTVTAY FVNHKVDENG NYVYDVVFHG MNTDTNTDVH VNKEPKAVIK 
SDSSVIVEEE INFDGTESKD EDGEIKAYEW DFGDGEKSNE AKAAHKYNKT GEYEVKLTVT 
DNNGGINTES KKIKVVEDKP VEVINESEPN NDFEKANQIA KSNMLVKGTL SEEDYSDKYY 
FDVAKKGNVK ITLNNLNSVG ITWTLYKEGD LNNYVLYATG NDGTELKGEK TLEPGRYYLS 
VYTYDNQSGA YTVNVKGKLK NEVKETEKDA IKEVENNNDF DKAMKVDSNS KIVGTLSNDD 
LKDIYSIDIQ NPSDLNIVVE NLDNIKMNWL LYSADDLSNY VDYANADGNK LSNTCKLNPG 
KYYLCVYQFE NSGTGNYTIN LQNK