| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0060 |
|---|
| Symbol | |
|---|
| ID | 4200973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 63533 |
|---|
| End bp | 64609 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638080935 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_694526 |
|---|
| Protein GI | 110799142 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | [TIGR01366] phosphoserine aminotransferase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.138135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATAAAA AGCTATTTAT ACCAGGACCT GTGGAGGTGA GAGAGGAAGT ATTAGAAAAA
ATGGCTACTC CTATGATTGG GCATAGAAGT AAAGAGGCAT CTCAATTACA AAGAAGAATA
AGCGATAATT TAAGGAAATT ATTTTTTACT AATAATGAAA TACTTTTATC AACAACTTCA
GGAAGTGGAT TAATGGAGGG AGCTATAAGA AGTTGTACTT TAAAGAAGGC TGCTGTATTT
TCTGTGGGGG CTTTTGGGGA TAGATGGTAT GAAATGGGGA TAAGTAATAA TGTTCCTGTG
GATAAATTTG AAGTTCCTTG GGGAAAAAGT ATTAATGTAG ATTTAATTGA TTCAGTTCTT
AAAACTGGAC AGTATGATTT AATAACAGTA ACTCATAATG AAACATCTAC AGGGGTTATG
AATGATTTAG AAGCAATAAG CAAAGTTATA AGGAAATATC CAGAGGTTAT ATTCTGTGTT
GATGCAGTTA GTTCTGCAGG TGGAAGTAAA ATAGAGGTGG ATAAACTTAA TATAGATATA
TGTATTACTT CTTCACAAAA AGCTTTAGGG CTTCCTCCAG GAATAGCAAT ATGTACATTT
TCAGAAAGAG CTAGGGAAAG AGCAGAAAAA GTTAAGTTTA GAGGAACGTA TTTAGATTTA
TTAGCTTTAT ATAAATATAT TAAAAAGAAG GATTATCAAT ATCCATCAAC TCCTTCTATT
TCACATATGT ATGCTTTAGA TTACCAATTA GATTATATAT TAAATGTAGA AGGGCTAGAA
AATAGATTCA ATAGACATAT TGAAATGGCT AAAATAGTTA GAGAATGGGC AGAAAAATAT
TTTGAAATTT ATCCTGAAAA GGAGTACTAT TCAAATACTC TTACAACTAT AAAAAATAAT
AAAAATATAG ATATTGGGGC TTTAAATAAG GAACTTGGGA AAAGAGGATT TCAAATATCT
AATGGGTATG GAAAGCTAAA GGATAAGACA TTTAGAATAG CACACATGGC TGACTGCCAA
GTTAAAGATA TAAAAGAATT ATTAAGCAAT ATAAATGAAA TTTTAGAATT GGAATAA
|
|---|
| Protein sequence | MHKKLFIPGP VEVREEVLEK MATPMIGHRS KEASQLQRRI SDNLRKLFFT NNEILLSTTS
GSGLMEGAIR SCTLKKAAVF SVGAFGDRWY EMGISNNVPV DKFEVPWGKS INVDLIDSVL
KTGQYDLITV THNETSTGVM NDLEAISKVI RKYPEVIFCV DAVSSAGGSK IEVDKLNIDI
CITSSQKALG LPPGIAICTF SERARERAEK VKFRGTYLDL LALYKYIKKK DYQYPSTPSI
SHMYALDYQL DYILNVEGLE NRFNRHIEMA KIVREWAEKY FEIYPEKEYY SNTLTTIKNN
KNIDIGALNK ELGKRGFQIS NGYGKLKDKT FRIAHMADCQ VKDIKELLSN INEILELE
|
|---|
| |