Gene CPF_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_0034 
Symbol 
ID4203017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp42133 
End bp42702 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content26% 
IMG OID638080909 
ProductTetR family transcriptional regulator 
Protein accessionYP_694502 
Protein GI110801421 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.345685 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAGAA CTAAGAAAGC TATTTTTGAA GCAGCTATAA ACGTTTTTGC TACTTCAGGT 
TATAATGGAT CAACTGTAGA TGAAATTGCA TCTAAAGCTA ATGTTGCTAA GGGAACACTT 
TATTATAATT TTAAAAGTAA AGAGGAAATT TTTAATTTTG TAATTAGTAA AGGCTTAGAA 
ATTTGGCATG AAAAATTAAC TGATATAGAA AATTTAGAAG ATGAGCCTAT AGAAAAATTA 
AAAAAACTTT TTAAAATGCA ATTTGAATTA TTATATGAAA ATAGAGCATT TTTTAAAATG 
GTAATGAGTC AGCTTTGGGG AAAAGAAACT AGGCAGGATG AACTAAGAAA TAAAATAACT 
GAGTATATTG AAGGAATAGA GAGAATATTA AAAGAAGCTA TTTCCAAAAA ACAAATAAGA 
GAGTGTGATA TTTCCTTACT AGCTCACAGT TTATTTGGAA GTCTTATATC AACATCCCTA 
TATGAATTAA GTAGAGATAA AGAGTTTAAT GTTAATAAAG TTATAGATGA GATTACAATT 
AACATCTTAG ATGGTATAGT TATAAAATAA
 
Protein sequence
MNRTKKAIFE AAINVFATSG YNGSTVDEIA SKANVAKGTL YYNFKSKEEI FNFVISKGLE 
IWHEKLTDIE NLEDEPIEKL KKLFKMQFEL LYENRAFFKM VMSQLWGKET RQDELRNKIT 
EYIEGIERIL KEAISKKQIR ECDISLLAHS LFGSLISTSL YELSRDKEFN VNKVIDEITI 
NILDGIVIK