Gene CPF_0004 details

Gene Information

• Locus tag: CPF_0004
• Symbol: recF
• ID: 4201736
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 3567
• End bp: 4652
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 24%
• IMG OID: 638080876
• Product: recombination protein F
• Protein accession: YP_694479
• Protein GI: 110801062
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATATAA AAAGTTTGCA ATTAATTAAT TATAGAAATT ATGAAAATTT ATCAATTAAG 
CTTTGTCCTA ATGTAAATGT CTTTATAGGT GATAATGCAC AAGGTAAAAC CAATGTAATA 
GAAGCTATAT ATTATTGTGG ATTTGCTAAG TCACACAGAA CTAATAGAGA CAAGGAGCTA 
ATAGAGTGGA ATAAGGACAG AGCTTTTATA AGGTTAGATG TTCATAAGGA TAGATTAGAC 
AAAATCATAG ATGTGAATAT TTTAAAAGAC GGAAAAAAAG CTATTAGCAT AAATTCAATA 
AAGATAAGTA AAATTGGAGA ATTAATTGGA ACATTTAACG TAGTTATGTT CTCTCCAGAA 
GATTTAAAAA TAGTAAAAGA ATCTCCTGGA ATAAGAAGAA GATTTATTGA TATGGAACTT 
AGCCAATTAA ACAAAAGGTA TTATCATAAT TTAGTTCAAT ATAATAAAGT CTTACATGAA 
AGAAATTTAG TTTTAAAGAA TAAAAATATA AATGAGGAAA TGTTAGACAT ATATGATATA 
CAATTGGCTC AATATGGAGA GAATATTATA AAGACTAGAT TAAAATATAT AGAACAGTTA 
AACAAATATT CTAAAGAAAT TCATAAAGAG ATAACTTCAG GAAAAGAAGA AATTGAATTT 
AAATATATTT CCACTGTAAA AGATTTAGAT AATATTAAAG ATTCTATGAT AAAACTATTA 
GAACAAAATA GAAAAAAGGA TATAGATAAA AGAGCTACAT CTATAGGTCC ACATAGAGAT 
GATTTTAATA TATATTTAAA TAATATAGAT GCAAAGATTT ATGGTTCACA AGGTCAGCAA 
AGAACTAGTG TATTAACAAT AAAATTTGCA TCTTTAAAAA TAATAAAAGA AATAACAGGT 
GAATATCCTG TGTTATTATT AGATGATGTA TTGTCAGAAT TAGACTTTAA TAGAAAAAGA 
TATGTTTTAA CATCAATAAA AAATATACAA ACAGTAATAA CATGTACGGG AATAGAAGAT 
CTAACCAGTT ATTTAGATGA AAACTCAAAA GTATTTAGAG TTATAAATGG ACGTATTCAA 
TGTTAA 

 

Protein sequence

MYIKSLQLIN YRNYENLSIK LCPNVNVFIG DNAQGKTNVI EAIYYCGFAK SHRTNRDKEL 
IEWNKDRAFI RLDVHKDRLD KIIDVNILKD GKKAISINSI KISKIGELIG TFNVVMFSPE 
DLKIVKESPG IRRRFIDMEL SQLNKRYYHN LVQYNKVLHE RNLVLKNKNI NEEMLDIYDI 
QLAQYGENII KTRLKYIEQL NKYSKEIHKE ITSGKEEIEF KYISTVKDLD NIKDSMIKLL 
EQNRKKDIDK RATSIGPHRD DFNIYLNNID AKIYGSQGQQ RTSVLTIKFA SLKIIKEITG 
EYPVLLLDDV LSELDFNRKR YVLTSIKNIQ TVITCTGIED LTSYLDENSK VFRVINGRIQ 
C