| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0002 |
|---|
| Symbol | dnaN |
|---|
| ID | 4202178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 2079 |
|---|
| End bp | 3179 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638080874 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_694477 |
|---|
| Protein GI | 110798947 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.279408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATATTTA CATGTGACAA AAATAAATTA CAAGAATCTA TAGCTATAGC TCAAAAAGCT
ATAACTGGAA AATCAACAAT GCCTATCTTA GAAGGTCTAT ACATAGAAGC TTCTGAGAAC
ATAGTAACTA TAATAGGATC AGATAAAGAT GTTAGTATAG AAACTAAATT TGAAGCTGAT
GTTACTGAAC CAGGGAAGTT AGTTGTTGAT GCTAAAATAT TTGGAGAGAT AATAAGAAAG
TTACCTAACG ATAAAATTAA AATAGAAACA GTATCAGAAG AAGCTATAAG AATAACTTGT
CAAAAATCTG TATTTGATTT ATTACATATG AATGCAGAAG ATTTTCCAAG CTTACCTAAG
ATAAACGAGA ATATGATATT CTCAATAAAC CAAGGAATTC TTAAAAATAT GATAAAAGGA
ACTTCTTTTG CCATAGCTCA AGATGAAACT AGACCTATTC TTCAAGGTAT ATTATTCGAA
ATTAAGGACT CTAAATTAAA CTTAGTAGCT TTAGATGGAT ATAGATTAGC AATAAGAACA
GAGAATATAG ATACTAACAA TACAATTAAT GCTGTTATAC CAGGAAAGAC ACTTAACGAA
GTAGCTAAGA TATTAGAAGA TTCAGAGGAA ATAGTCAACA TAACATTTAC CCCAAATCAC
ATATTATTTA ATATGGGAGA TACAAAAGTT ATTTCTAGAT TGCTAGAAGG TGAATTCATA
AAGTATGATG CCTTATTACC AAAAGAACAT AAGTTACAAA TTGAAGTTGA TAAACAAACT
CTTCAAAATG GTATTGAAAG AGCATCTCTT ATGGCTAAGG AAGGAAATAG TAACTTAGTT
AAGTTTGATA TAACTGATGA AAATATAGTA ATCACATCTA ATTCTCAATT AGGAAAAGTT
AGAGAAGAGG TTACTATCAA ATTGCAAGGA GATGAAATTC AAATTGCATT TAACTCAAAA
TACTTACTAG ATGTTTTAAA AAATATGGAA GAGGACAAAA TAGAATTAAG AATGACAAGT
AGCATATCTC CATGTATTAT AAGAAATAAG AACAATGATT TATGTGAATA TTTAGTTCTA
CCTGTTAGAA TAGCAAGATA A
|
|---|
| Protein sequence | MIFTCDKNKL QESIAIAQKA ITGKSTMPIL EGLYIEASEN IVTIIGSDKD VSIETKFEAD
VTEPGKLVVD AKIFGEIIRK LPNDKIKIET VSEEAIRITC QKSVFDLLHM NAEDFPSLPK
INENMIFSIN QGILKNMIKG TSFAIAQDET RPILQGILFE IKDSKLNLVA LDGYRLAIRT
ENIDTNNTIN AVIPGKTLNE VAKILEDSEE IVNITFTPNH ILFNMGDTKV ISRLLEGEFI
KYDALLPKEH KLQIEVDKQT LQNGIERASL MAKEGNSNLV KFDITDENIV ITSNSQLGKV
REEVTIKLQG DEIQIAFNSK YLLDVLKNME EDKIELRMTS SISPCIIRNK NNDLCEYLVL
PVRIAR
|
|---|
| |