| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3752 |
|---|
| Symbol | |
|---|
| ID | 4186726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 4337437 |
|---|
| End bp | 4341105 |
|---|
| Gene Length | 3669 bp |
|---|
| Protein Length | 1222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638073739 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_680328 |
|---|
| Protein GI | 110640118 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.196365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTAG TAAAGCACAA TATAGTCCGT CAAGCCGCGG TTCTCTGCCT GTTGGCTTTT
TCATTTATAG CTTCTGCACA AGTTTCCCCA GAGCCGTTTA TTACACACAG GTTTGTGTTG
ATTGGTGATG CAGGGAGATT ATTAAATGGC AGAAGTATTG TACCGGAAGC TGTTGCCAGA
CATATTAATC AAACAGACAG TACAGCAACC ATTTTATTTT TAGGGGATAA TGTGTATGAA
AAGGGATTGC CGGACAAAGA AGACAACAAC TATGAAGCTT ATACAGAAGT ACTATCGAAA
CAATTGCTTC CGTTCGATTC GCATGCTGCA AACGTTTATA TATTGCCCGG TAATCATGAC
TGGCAGAAAA GCGGTCCTGA AGGTTGGGAA CGCATCAAAC GCCAGGCTGC ATGGGTAGAC
AGCCTGCATA AAAGCAATAT TATTTTTATG CCAAAAGAAG GTTGTCCCGG TCCGGAAGAA
ATAACTATTA ATGACAGCAT AACGCTGGTT ATACTGGATA CACAATGGTG GCTGCATCCG
TTTGATAAAC CAGGTATAGA TAGTGATTGT GCCTGTAAAA CAGAAGAGGA TGTAATCAAT
GCGTTAAAAA ATATTGCATA TCGCAACAGA AACAAACGGA TTATTTTTAC ATCACACCAG
CCGATGCGCA GCTATGGTAT CCATGGCGGC TATTATACGT TGAAACAGCA TATGTTCCCG
TTTACAGAGA TGGCTGATAA TGCATATATT CCATTGCCAG TGTTAGGGTC TTTATATCCA
TTGGTTCGAG GAACATTCGG TAACATTCAG GATTTAAAAC ATCCGGAATA CCGAAGCATG
GTTTCACGCA TTGAAGAGGC AATGTCTGCA GCTCCTGATG TGATCTATGC AGGCGGTCAC
GACCATTCGC TGCAGCTTAT TCAGGAAGGG ACACAAAGTT ATATTGTGAG CGGCTCAGGC
ATAAACAGAG AGCGTGTTAA AAAAGGCAAA AATGCTTCTT ATGTTTCAGA CCAGAGAGGC
TTTGTTGAAC TTGTATACAG ATCAGACGGA AGTGAGCAGG TTGTTATCTA TGAAGTAGAT
GAGCAGGCTA ATTACAGAAT AGCATACGAT ACTGTGCTGC CCATGAAGCC ACTGCCCAAA
GAAATTCCAT TGACAGCAGA AACAGATATT CAGCAGGACA GTATTACGGT TGCTATTGCT
CCGGAATATG ATCACGTAAA CAATGCACAT CGTTTTTGGT TTGGTGAAAA TTATCGTAAG
ATCTGGGCAA CACCAGTTAC ACTTACTGTT TTTTATATTG AGAAAGAAGG CTTGCAGATT
TTGCAGCAAG GCGGTGGGCA ACAGACGAAG TCGCTTCGTA TGGTAGATGC TGCAGGAAAA
GAATGGGTAC TTCGTACGGT TCAAAAAGAC CCGGCGAAAG CATTGCCTGA AAACTTGAGA
GGTACTGTTG CGAAGAACAT TGTTCAGGAT CAGATCTCTG CTGCGCAGCC ATACGCGCCG
TTAACAGTAC CCATCCTTGC TGAAGCACTA GGCGTACCTC ATGCCAATCC TCAAATTGTA
TTTGTGCCGA ATGACCCTGC ATTAGGTATG TACCGGGCTG AATTTGCCAA CAGCATTTGC
ATATTTGAAG AGCGGCAACC AACATCCAAC GGTGCTGTCA GAACCTATAA CACAACAAAA
GTGCTGGAGA AACTGCAGGA AGACAACGAC AATCTGATTG ATGAAAAGGC TGTGCTTACT
GCACGTATGC TCGACTTGCT TATTGGTGAT TGGGACAGGC ATGAAGACCA ATGGCGCTGG
CAGAAAACAA TAGATGGTAA GCGATCCGTT TATGCACCTA TACCGAGAGA CCGCGATCAA
ACGTATTTTG TCAATTCCGG TATACTGCCC TACATTGCTT CCCGAAAGTG GGCCATGCCT
AAAATACAGG GCTTTGATGA AAAGATCAGG GATGTTAACG GCTTCATGTT TAACGCGCGG
TATTTTGACC GGTTTTTTTT ACATGAACTT AATGATACGG AATGGATAAA AGTATTGAAG
CATTTGCAGA CAACGCTGAC AGATTCCATA GTAACAGAAG CCGTACATCA ACTGCCAGAC
AGTGTATATG CGCAATGCGG CGATCAGATA CGCGATAATT TAATTGCACG AAGAAATGCA
TTGTTAAAAA ACGGACTTAA ATTTTACGCT TTTTTAGCAC AAACGGTGGA GATTCCCGGT
TCAGACAAAA ATGACTTTTT TGAATTAACG TATCAGAACA AAGGCGACAT ACGTTTAAAA
GTTTATAAAA TCAAAAAAGA CGGAAGCAAA GGGAATGTTT TTTATGAACG CACCTTTAAT
AAAAAAGTAA CAAAAGAAAT CCGATTGTAC GGCAGGGGTG GCGAAGATGT ATTTGAAGTA
ACCGGCAAAG GACGGTCTCC CATAAAAGTG CGAATGGTCG GCGGTTCAGA AAAAGATTCA
TTTAATATAA ACGCTGCAGT TCACAGTAGA AAAAACCTTA TTATATACGA TCGGTCTGAC
AAAGAAAATG AATTTCCGAA ATGCTCAAAA GCAATCATAC ACAAAAGTAC ACATCCGGAA
ATAAACGAAT ACAATGGACG TACGTTTAAG TACAATCAGT TGCTGCCACA GGCTGCAGGC
GGTTACAATT TCGATGATGG CATCTGGCTT GGTGCAGGTA TACAGTATAC CAAACATGGC
TTCAGAAAAG AGCCGTATGC ACAGCGTCAT CGGTTATTGC TTGGCCATGC ACTCGCCACT
AAAGCAACAA ATGTTAAGTA TTCCGGACAT TTTGTTAAGT TCATTGGCAA CAATGACCTG
AAAATAAATT TTGATGCACG CGCTCCAGAT AACGTTTCTA ACTTTTTTGG CATAGGCAAT
GAAACAGAAT TTGTAAAAAA TGGCGACAAT CCTATTACCT ATTACCGTAC ACGATATAAC
CTGATCACGG CTCAAATAAA ACTGGAGCAT ACATTTGCGC GCACGTTTAA GGTGTATGGC
GGATTGATCG GACAATATTA TTCAACAGAT TCCACTGAAA ATATTGGCCG GTATATTAAT
GTATATGACA GCAGCAATCC GGAAGAAAAC GTATTTACAA AAAAAATATT TGCAGGTTTG
ATCGGCGGCT TTCAGCTTGA CACAAGGAAC AGCGAATTTA TGCCTATACG TGGGGTATAT
TGGAATACCT TCTTAACAGG AATGCAGCAG CTGGATGAAT CGAATCAGAA TTTCGGTCGC
TTTGAAACAG ATATGACTGT TTATACAAGT TTTAATAAAG ACCCAAGATT TGTATTGATC
AACCATTTCG GCGGCGGATT AAATGCAGGC GATCCATACT TTTTTCAGAT GTGCTATTTA
GGTGGAAGCA CAAACTTGAG AGGGTACAGG AATTACCGTT TTGCGGGCAA TAATAAATTC
TTCTACAACA TAGAAATGAG ATTGAAATTA TTTGATTTTA CTTCGTATCT TTTCCCTGGG
TCAATCGGCC TGATTGCGTT TAATGATTTA GGAAGGGTAT GGAGCGATGG TGAATCATCA
AGCCTTTGGC ACGATGGTTA CGGGGGAGGT TTTTATATTG TGCCGGCTAA AATGCTGGTT
GTGAATATGA CGCTTGGTTT TTCAAAAGAA GGCGTGTTAC CATATATTTC GTTAGGTGTT
AAATTATAA
|
|---|
| Protein sequence | MLLVKHNIVR QAAVLCLLAF SFIASAQVSP EPFITHRFVL IGDAGRLLNG RSIVPEAVAR
HINQTDSTAT ILFLGDNVYE KGLPDKEDNN YEAYTEVLSK QLLPFDSHAA NVYILPGNHD
WQKSGPEGWE RIKRQAAWVD SLHKSNIIFM PKEGCPGPEE ITINDSITLV ILDTQWWLHP
FDKPGIDSDC ACKTEEDVIN ALKNIAYRNR NKRIIFTSHQ PMRSYGIHGG YYTLKQHMFP
FTEMADNAYI PLPVLGSLYP LVRGTFGNIQ DLKHPEYRSM VSRIEEAMSA APDVIYAGGH
DHSLQLIQEG TQSYIVSGSG INRERVKKGK NASYVSDQRG FVELVYRSDG SEQVVIYEVD
EQANYRIAYD TVLPMKPLPK EIPLTAETDI QQDSITVAIA PEYDHVNNAH RFWFGENYRK
IWATPVTLTV FYIEKEGLQI LQQGGGQQTK SLRMVDAAGK EWVLRTVQKD PAKALPENLR
GTVAKNIVQD QISAAQPYAP LTVPILAEAL GVPHANPQIV FVPNDPALGM YRAEFANSIC
IFEERQPTSN GAVRTYNTTK VLEKLQEDND NLIDEKAVLT ARMLDLLIGD WDRHEDQWRW
QKTIDGKRSV YAPIPRDRDQ TYFVNSGILP YIASRKWAMP KIQGFDEKIR DVNGFMFNAR
YFDRFFLHEL NDTEWIKVLK HLQTTLTDSI VTEAVHQLPD SVYAQCGDQI RDNLIARRNA
LLKNGLKFYA FLAQTVEIPG SDKNDFFELT YQNKGDIRLK VYKIKKDGSK GNVFYERTFN
KKVTKEIRLY GRGGEDVFEV TGKGRSPIKV RMVGGSEKDS FNINAAVHSR KNLIIYDRSD
KENEFPKCSK AIIHKSTHPE INEYNGRTFK YNQLLPQAAG GYNFDDGIWL GAGIQYTKHG
FRKEPYAQRH RLLLGHALAT KATNVKYSGH FVKFIGNNDL KINFDARAPD NVSNFFGIGN
ETEFVKNGDN PITYYRTRYN LITAQIKLEH TFARTFKVYG GLIGQYYSTD STENIGRYIN
VYDSSNPEEN VFTKKIFAGL IGGFQLDTRN SEFMPIRGVY WNTFLTGMQQ LDESNQNFGR
FETDMTVYTS FNKDPRFVLI NHFGGGLNAG DPYFFQMCYL GGSTNLRGYR NYRFAGNNKF
FYNIEMRLKL FDFTSYLFPG SIGLIAFNDL GRVWSDGESS SLWHDGYGGG FYIVPAKMLV
VNMTLGFSKE GVLPYISLGV KL
|
|---|
| |