Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3680 |
Symbol | |
ID | 4184653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 4252139 |
End bp | 4252867 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 638073667 |
Product | ABC transporter |
Protein accession | YP_680256 |
Protein GI | 110640046 |
COG category | [S] Function unknown |
COG ID | [COG4422] Bacteriophage protein gp37 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.016311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACAAT CAAGTATTGA ATGGACAGAA ATGACATGGA ATCCTACTAC TGGGTGTACA AAAATTTCTG CTGGTTGCAA ATTTTGTTAT GCTGAAATAA TGTCCAAGCG GCTTAAGGCA ATGGGCATTG ATAAGTATAA AGATGGATTT AAAGTTAATA TATATCCCGA TGCCCTATCA ATTCCTTACA CTTGGAAATC GTCAAAAGTG GTTTTTGTCA ACTCAATGAG TGATTTATTT CATGAAGATA TACCTTTAGA TTATATTAAA AAGGTATTTC AGGTTATGAA TGAAAATCCA CAACATGTTT TTCAGGTTTT AACTAAAAGA GCAGAACGAT TATTTGAAGT ATATAAAGAA TTGAAGTGGA CTCATAATAT CTGGATGGGC GTTTCAGTTG AAAATGATAA AGTAAAAAAT CGAATTGATC TTTTAAGAAA AACTTCTGCA AAAGTGAAGT TCCTTTCATT AGAACCTTTA ATAGGACCAT TGCCGAAATT AAATTTAAAA AAAATTGACT GGGTAATAGT TGGTGGCGAA AGTGGCCATA GACCTCGACC AATGGATTCA GACTGGGTTT TAGATATTCA AGAGCAATGT CTTAAATCAG ATGTCGCATT TTTCTTCAAG CAATGGGGAG GTAGGAATAA AAAGGCCAAT GGTCGTTTAT TGAATGGAAG AACATATGAT GAAATGCCAG AAATTATGGA AATAGAGAAA GTTAAATAG
|
Protein sequence | MAQSSIEWTE MTWNPTTGCT KISAGCKFCY AEIMSKRLKA MGIDKYKDGF KVNIYPDALS IPYTWKSSKV VFVNSMSDLF HEDIPLDYIK KVFQVMNENP QHVFQVLTKR AERLFEVYKE LKWTHNIWMG VSVENDKVKN RIDLLRKTSA KVKFLSLEPL IGPLPKLNLK KIDWVIVGGE SGHRPRPMDS DWVLDIQEQC LKSDVAFFFK QWGGRNKKAN GRLLNGRTYD EMPEIMEIEK VK
|
| |