Gene CHU_3680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3680 
Symbol 
ID4184653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp4252139 
End bp4252867 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content33% 
IMG OID638073667 
ProductABC transporter 
Protein accessionYP_680256 
Protein GI110640046 
COG category[S] Function unknown 
COG ID[COG4422] Bacteriophage protein gp37 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.016311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACAAT CAAGTATTGA ATGGACAGAA ATGACATGGA ATCCTACTAC TGGGTGTACA 
AAAATTTCTG CTGGTTGCAA ATTTTGTTAT GCTGAAATAA TGTCCAAGCG GCTTAAGGCA
ATGGGCATTG ATAAGTATAA AGATGGATTT AAAGTTAATA TATATCCCGA TGCCCTATCA
ATTCCTTACA CTTGGAAATC GTCAAAAGTG GTTTTTGTCA ACTCAATGAG TGATTTATTT
CATGAAGATA TACCTTTAGA TTATATTAAA AAGGTATTTC AGGTTATGAA TGAAAATCCA
CAACATGTTT TTCAGGTTTT AACTAAAAGA GCAGAACGAT TATTTGAAGT ATATAAAGAA
TTGAAGTGGA CTCATAATAT CTGGATGGGC GTTTCAGTTG AAAATGATAA AGTAAAAAAT
CGAATTGATC TTTTAAGAAA AACTTCTGCA AAAGTGAAGT TCCTTTCATT AGAACCTTTA
ATAGGACCAT TGCCGAAATT AAATTTAAAA AAAATTGACT GGGTAATAGT TGGTGGCGAA
AGTGGCCATA GACCTCGACC AATGGATTCA GACTGGGTTT TAGATATTCA AGAGCAATGT
CTTAAATCAG ATGTCGCATT TTTCTTCAAG CAATGGGGAG GTAGGAATAA AAAGGCCAAT
GGTCGTTTAT TGAATGGAAG AACATATGAT GAAATGCCAG AAATTATGGA AATAGAGAAA
GTTAAATAG
 
Protein sequence
MAQSSIEWTE MTWNPTTGCT KISAGCKFCY AEIMSKRLKA MGIDKYKDGF KVNIYPDALS 
IPYTWKSSKV VFVNSMSDLF HEDIPLDYIK KVFQVMNENP QHVFQVLTKR AERLFEVYKE
LKWTHNIWMG VSVENDKVKN RIDLLRKTSA KVKFLSLEPL IGPLPKLNLK KIDWVIVGGE
SGHRPRPMDS DWVLDIQEQC LKSDVAFFFK QWGGRNKKAN GRLLNGRTYD EMPEIMEIEK
VK