Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3643 |
Symbol | dxs |
ID | 4184887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 4197369 |
End bp | 4199279 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638073630 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_680219 |
Protein GI | 110640009 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATTCAAC CTGGAGAACT ATTACGTACG ATTCATTCCC CCGAAGAGCT GAGAAAACTC GATGAAACTC AACTCATTCA GGTAAGTGAA GAGTTACGTC AATTTATTGT AGACAATGTC TCAGTATATG GCGGGCATTT TGCCGCGAGC CTAGGTGTGG TTGAACTGAC CGTTGCCTTA CATTATGTAT TTAATACACC TGTAGATCAG CTTGTGTGGG ATGTTGGCCA CCAGGCATAC GGGCATAAAA TATTAACCGG CCGTATGGAA AATTTCCATA CAAACCGAAC CTATAACGGA CTTTCGGGTT TTCCGAAACG TTCCGAAAGC CCATATGATA CGTTTGGTGT CGGACACTCT TCAACCTCTA TATCGGCAGC ACTGGGTATG GCTGTAGCCA GTCAGTATCA AAAAGACAAC CGCCAGCACA TTGCCGTAAT CGGTGACGGT GCATTAACAG GCGGAATGGC TTTTGAAGCG ATGAATCATG CCGGTGTTAC CAATTCAAAT TTGCTGATCG TGCTTAACGA CAATTGCATG GCAATTGATC CGAATGTGGG TGCGCTGAAA GATTATCTGG TTGACATCAC AACTTCCCGC ACGTACAACC GTGTGCGGGA TGAAGTATGG AACATGCTTG GAAAAATAAG TAAGTTCGGA CCCAATGCGC AGGCAATAGC TTCTAAAGTT GAAAGCGGGT TAAAAGCATC GTTGCTTAAG CAAAGCAACT TATTTGAATC GCTGCATATA CGTTATTTCG GTCCGGTAGA TGGCCATGAC CTGAACCACC TGGTACAGGT GCTGAATGAT TTAAAAGATA TTCCCGGACC AAAGATCTTA CACACCCTGA CCGTTAAAGG CAAGGGGTAT GCGCTTGCCG AAAAAGATCA GGTTAAATGG CACGCGCCGG GAAAATTTGA TAAAGTAACG GGACAAATTC ACGTTAAGAC CTACGATACA CCTCAGGCTC CTAAATACCA GGATGTTTTT GGAAATACCA TTATTGAACT GGCGGAAAAG AATGATAAGA TCATGGGTAT TACGCCTGCC ATGCCTTCAG GATGTTCGCT GAATTTAATG ATGGAAAAAA TGCCCGACCG GGCATTTGAT GTAGGCATTG CCGAACAGCA TGCCGTTACT TTTTCTGCCG GTTTAGCCAC ACAGGGATTA ATTCCTTTCT GTAATATTTA TTCAACATTC ATGCAGCGCG CATACGATCA GGTAATCCAT GATGTGTGTA TTCAGAATTT GCATGTTATT TTCTGCCTGG ATCGTGCGGG CTTTGCCGGT GTCGACGGAC CAACACACCA CGGCGCCTAT GATCTTGCTT TTTTCCGCTG CATACCAAAC TTAGTGGTTT CTGCTCCGAT GAATGAACAG GAACTGCGGA ACTTAATGTA TACAGCTCAA CTGCAAAAAA ATAAAGGGCC TTTCTCTATC CGTTACCCAC GCGGCCAGGG TGTAATGCCC AACTGGAAAA CACCTTTTGA AGAAATTACG ATTGGCAAGG GCAGAAAAGT AAGTGACGGA GATGATGTTG CCATCCTCAG CATAGGCCAT ATCGGTAATT ATGTTATTGA AGCAAAAGCA TTACTGCGCG AAGAAGAATT ATCTCCTGCC CATTTTGATA TGCGTTTTGT TAAACCAATT GATGAAGAAA TGCTTCACCT GGTGTTTAAG AAATTTAAAA AAATAATTAC GGTGGAAGAT GGCTGCTTAA TGGGTGGCTT TGGTTCGGCC GTATTGGAAT TTATGGCAGA TAACAACTAT GCGGCGCAAG TAATCCGGCT GGGTATTCCC GACCGTATTG TTGAACATGG TGAGCAGGCT GAACTGCACA AAGAATGCGG CTTCGACCCG CAAAGCATTG CCAGAACCGT TCGTAACCTT TCCGGTGTTG TATTAAAATA A
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Protein sequence | MIQPGELLRT IHSPEELRKL DETQLIQVSE ELRQFIVDNV SVYGGHFAAS LGVVELTVAL HYVFNTPVDQ LVWDVGHQAY GHKILTGRME NFHTNRTYNG LSGFPKRSES PYDTFGVGHS STSISAALGM AVASQYQKDN RQHIAVIGDG ALTGGMAFEA MNHAGVTNSN LLIVLNDNCM AIDPNVGALK DYLVDITTSR TYNRVRDEVW NMLGKISKFG PNAQAIASKV ESGLKASLLK QSNLFESLHI RYFGPVDGHD LNHLVQVLND LKDIPGPKIL HTLTVKGKGY ALAEKDQVKW HAPGKFDKVT GQIHVKTYDT PQAPKYQDVF GNTIIELAEK NDKIMGITPA MPSGCSLNLM MEKMPDRAFD VGIAEQHAVT FSAGLATQGL IPFCNIYSTF MQRAYDQVIH DVCIQNLHVI FCLDRAGFAG VDGPTHHGAY DLAFFRCIPN LVVSAPMNEQ ELRNLMYTAQ LQKNKGPFSI RYPRGQGVMP NWKTPFEEIT IGKGRKVSDG DDVAILSIGH IGNYVIEAKA LLREEELSPA HFDMRFVKPI DEEMLHLVFK KFKKIITVED GCLMGGFGSA VLEFMADNNY AAQVIRLGIP DRIVEHGEQA ELHKECGFDP QSIARTVRNL SGVVLK
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