| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3614 |
|---|
| Symbol | radA |
|---|
| ID | 4183598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 4168924 |
|---|
| End bp | 4170291 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638073601 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_680190 |
|---|
| Protein GI | 110639980 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.356128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG TAAAATCGTC CTATTTCTGT CAAAGCTGTG GTGCCCAATC ACCCAAATGG
GTCGGCCGCT GTGCTTCCTG TGGAGAATGG AATACCTATG TAGAAGAAAT TATTCAGAAA
GAAGATAAAA CTTCGTGGAA CAGCAGCTCT GCTAAAATTG CTCAGCGCCC GCGTCACCTC
AAAGAAATTA CATACAGTCA GGAACAGCGG ATCATTACAC CCGACGGGGA ACTGAACCGT
GTTTTAGGCG GAGGCATTGT GCCGGGTTCC ATTGTTCTGA TTGGCGGAGA GCCGGGTATT
GGCAAATCAA CCCTGATGCT CCAGGTTGCA TTAAAACTTT CAACCGTTAA AGTATTATAT
GTTTCGGGAG AAGAAAGCGA ACAGCAGATT AAGATGCGCG CCGAACGTAT TGAAGTTCCC
TCAGATGCCT GTTATATTTT AACCGAAACA TCTACGCAGA ATATCTTTAA GCAGATTGAA
ATGCTGCAGC CTGAAGTATT GATCATCGAT TCAATTCAGA CACTGCATTC TGCTTTTATA
GAATCTGCTG CGGGCAGTAT CTCTCAGGTA CGTGAATGTA CCGCAGAGTT GTTGAAATAT
GCGAAAGAAA GCGGTACACC TGTTTTCCTC ATCGGGCATA TTACGAAAGA AGGCACACTG
GCCGGACCAA AAGTACTGGA ACATATGGTT GATACCGTAT TGCAGTTTGA AGGTGATCAG
CATCTGTCGT ATCGCATCCT TCGTACAACA AAAAACCGTT TTGGTTCTAC CTCTGAACTG
GGTATCTATC AAATGTCGGG AGAAGGCTTA CGTGAAGTAA CTAATCCATC AGAAATATTA
TTATCGCAAC GCGACGAAGC GATCAGCGGT ATTGCAATTG GTGCAACACT TGAAGGCAAC
AGGCCGCTGC TGATAGAAAT ACAGTCGCTG GTAAGTGCTG CAACGTACGG TACACCGCAA
CGGAGCAGTA CAGGTTTTGA TTCAAAACGA TTGAACATGC TGCTTGCTGT ATTGGAGAAA
CGCGGCGGCA TGCGCTTTGG CGCCCAGGAT GTATTCCTGA ATATTGCCGG TGGTTTAAAG
GTAGAAGATC CCGCACTGGA CATGGCTGTG TGTGTAAGTC TGGTTTCTTC TTTTCACGAT
GCCATTATCC CGGCAGATAT CTGCTTTGCC GGTGAAGTTG GTTTGGGCGG TGAGATCCGT
GCCGTAAACA GGATTGAACA ACGTATCTCT GAGGCTGAAA AGCTGGGCTT TAAGCATATC
TTTATTTCTA AATACAATAT GAAAAGCCTG GACCCAAAAC GGTTCACGAT ACAACTGCAT
GAGGTAGCAC GTCTGGGAGA AGTGTTTGAT AATATTCTGC AAAGCTAA
|
|---|
| Protein sequence | MAKVKSSYFC QSCGAQSPKW VGRCASCGEW NTYVEEIIQK EDKTSWNSSS AKIAQRPRHL
KEITYSQEQR IITPDGELNR VLGGGIVPGS IVLIGGEPGI GKSTLMLQVA LKLSTVKVLY
VSGEESEQQI KMRAERIEVP SDACYILTET STQNIFKQIE MLQPEVLIID SIQTLHSAFI
ESAAGSISQV RECTAELLKY AKESGTPVFL IGHITKEGTL AGPKVLEHMV DTVLQFEGDQ
HLSYRILRTT KNRFGSTSEL GIYQMSGEGL REVTNPSEIL LSQRDEAISG IAIGATLEGN
RPLLIEIQSL VSAATYGTPQ RSSTGFDSKR LNMLLAVLEK RGGMRFGAQD VFLNIAGGLK
VEDPALDMAV CVSLVSSFHD AIIPADICFA GEVGLGGEIR AVNRIEQRIS EAEKLGFKHI
FISKYNMKSL DPKRFTIQLH EVARLGEVFD NILQS
|
|---|
| |