| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3602 |
|---|
| Symbol | topB |
|---|
| ID | 4184808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 4154111 |
|---|
| End bp | 4156270 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638073589 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_680178 |
|---|
| Protein GI | 110639968 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.358507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTTT GCATTGCCGA AAAACCTAGT GTTGCCAAAG ATATCGCTGA AGTACTTGGT
GCTAAAAAGC GCAACGATGG CTATTGGGAA GGTAATGGAT ATCAGGTAAC GTGGACATTC
GGGCATTTTT GTACCCTGAA AGAACCACAT GATTATCTGG ACAGGTGGAA GATGTGGCGC
CTGGAAGATC TTCCTATGAT CCCCCCTAGT TTCGGTATTA AACTGATCGA CAATTCAGGC
GTTAAAAAAC AATTTAACGT AATTCAAAAA CTGGTAAATG CCTGCGACGA AGTTATAAAT
TGTGGTGATG CCGGACAGGA AGGAGAACTG ATTCAGCGCT GGGTCTTGCT GAAAGCAAAA
TGTGCCGTAC CGGTAAAGCG ATTATGGATC TCGTCGTTAA CAACCGAAGC GATTAAAGAA
GGTTTTACAA AATTAAAAGA AGCGGACCAA TATAATAATT TATATGCCGC AGGCAGTGCC
CGTGCCATCG GCGATTGGCT GCTGGGTATG AATGCTACGC GTCTGTTCAC TAAAAAATTC
GGCCAGGGCA AAATTGTTCT GTCTATAGGC CGTGTGCAGA CACCTACGCT GGCAATGATC
GTAGCGCGGC AGAAGGAAAT AGACGCCTTC GTTTCAGAAG AGTACTGGGA GTTAAAAACC
ACCTACCGTG AAACGGAATT CACCGCTACC ATTGAGCGTT TAAAGTCGCT CGACAAAGCA
AACAAAGGAC TTGAGTATTT AAAAGGACAT CCGTTTGTAG TTACATCCTT CGAAATTAAA
GAAGGCAAAG AAGGAAATCC AAAACTTTTT GATCTTACGT TACTTCAGGT TGAAGCAAAT
AAAAAATTCG GTTATTCGGC TGAAGACACG TTGAAATATG TACAGACCTT ATACGAAAAA
AAGTTTGTCA CCTATCCAAG AGTAGATACC ACGTACCTTT CTGAAGATCT GTACCCAAAA
GTGAAAGGCA TTTTAGAAGA CTTAACCATT TACAGTCATT TAACGGCTCC GGTTCTGGCC
AAACCAATTC CGAAATCAAA GGCTGTTTTT GACGATAAAA AAGTTACGGA TCACCACGCC
ATTATTCCTA CGGGTGTTAC CCCGTCTCCG AATTTACAGA TTGAGGAAAA ACGTATTTAT
GATTTAATCG CACGCCGTTT TATTGCTGTA TTCTATCCGG AATGTAAAGT GTCCAACACA
ACGGTATTAG GCACTGTGGG GCAGGTAGAG TTTAAAGCTA CGGGAAAGCA GATCATTGAA
GCAGGCTGGA AAGAAGTCTA TGCAAACGAT AAAACGGAAA AGAAAGAAGA AGGCGACGAA
GAAAAAGTAA TGCCCAACTT TACCGTAGGC GAAACCGGAC CGCACGAGCC CAAAGTACAT
CAAGGGAAAA CGTCTCCGCC GAAAGCATAC ACTGAAGCAA CGCTGCTGCG TGCTATGGAA
ACAGCAGGCA AACAGGTTGA AGACGAAGAG ATGCGTGAAC TGTTAAAGGA CAACGGTATC
GGCCGCCCGT CAACACGCGC CAATATTATT GAAACACTTT TCAGACGGAA ATACATAGAA
CGTAAAAAGA AAAATATTTT TGCTACGCAA ACGGGCATGG ATCTGATCGA TTGCATCCAC
TCTGAATTAT TGAAGAGCGC TGAACTGACC GGCAACTGGG AACGCAAGCT GCGCCTGATG
GAGAAAGGCG AATATCAGCT CGAAACCTTC AAGCAGGAGT TAATTGATAT GGTTACCGAG
ATTACCAAAG AAGTTAAAAG CAATTCCTAC AAAGCAATCT ACATTGCACC GGAGAAATCC
AAAGCACCGG CCAGGTCTGC CCCGAAAGAA CCGGCAACCG GCAGCAAAGA AGGTAAGACA
AAGGAAGCAA AAGAAAAAAA GATTAAGGAA GAGGTTTCCA TTGAAACATT AAAATGCCCT
AAGTGTAAAG AATATCTGCT GAAAAAAGGA AATACTGCTT ACGGCTGTTC AAATTTTCAG
CAATGCGGAT TTAAAATTCC GTTTGTAATG CTGGGTAAAA AACTCAGCGA TAAAAACATT
TTTGATTTGC TGAGCAAAGG CAAGACAGCC AAAATGAAAG GTTTCGTAAT GCCCGGCACA
GAGAAAGAAG TGGAAGGCAA ACTGGTGATG AGCGGTAATT TTAACTTAGA GCTGGAGTAA
|
|---|
| Protein sequence | MKLCIAEKPS VAKDIAEVLG AKKRNDGYWE GNGYQVTWTF GHFCTLKEPH DYLDRWKMWR
LEDLPMIPPS FGIKLIDNSG VKKQFNVIQK LVNACDEVIN CGDAGQEGEL IQRWVLLKAK
CAVPVKRLWI SSLTTEAIKE GFTKLKEADQ YNNLYAAGSA RAIGDWLLGM NATRLFTKKF
GQGKIVLSIG RVQTPTLAMI VARQKEIDAF VSEEYWELKT TYRETEFTAT IERLKSLDKA
NKGLEYLKGH PFVVTSFEIK EGKEGNPKLF DLTLLQVEAN KKFGYSAEDT LKYVQTLYEK
KFVTYPRVDT TYLSEDLYPK VKGILEDLTI YSHLTAPVLA KPIPKSKAVF DDKKVTDHHA
IIPTGVTPSP NLQIEEKRIY DLIARRFIAV FYPECKVSNT TVLGTVGQVE FKATGKQIIE
AGWKEVYAND KTEKKEEGDE EKVMPNFTVG ETGPHEPKVH QGKTSPPKAY TEATLLRAME
TAGKQVEDEE MRELLKDNGI GRPSTRANII ETLFRRKYIE RKKKNIFATQ TGMDLIDCIH
SELLKSAELT GNWERKLRLM EKGEYQLETF KQELIDMVTE ITKEVKSNSY KAIYIAPEKS
KAPARSAPKE PATGSKEGKT KEAKEKKIKE EVSIETLKCP KCKEYLLKKG NTAYGCSNFQ
QCGFKIPFVM LGKKLSDKNI FDLLSKGKTA KMKGFVMPGT EKEVEGKLVM SGNFNLELE
|
|---|
| |