| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3589 |
|---|
| Symbol | ydiO |
|---|
| ID | 4184795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 4140326 |
|---|
| End bp | 4142119 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638073576 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_680165 |
|---|
| Protein GI | 110639955 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.239864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTT CATCAACATC AACAGACAAG CGCTTTAAAG GAGGCGAGTA CATCATTCGC
GAACAGGAAG CATCCAGTAT CTTCATCCCG GAACAGTTTG ACGAAGAACA GAAAATGATG
GCTGATATGG CCAGAGATTT TTTAGCTACT GAAGTACACC CGATTCTTGA TCGTATTGAT
GCGCAGGAAC CAGGCTTGAT GGAAAAATTG CTTGAAAAAG CAGGCGAACT CGGTTTGCTT
GCTACGTCTA TTCCCGAACA ATACGAAGGT TTCGGAAAGG ACTTTAACAC ATCTTTGTTA
CTAACAGAGA TTGTTGGTGC AGGTCACTCG TTTGCTGTTG CACTTGCAGC GCATACAGGT
ATCGGTACCT TACCGATTCT ATATTTTGGT ACAGAAGAAC AAAAGAAAAA ATATTTACCG
AAGCTTGCCA GTGGTGAGTG GAAAGCAAGT TATTGCCTGA CAGAGCCAGG TTCAGGTTCG
GATGCGTTGG CTGCTAAAAC AAAAGCAGTA CTTTCTGCAG ATGGCAGCCA TTATATTTTG
AACGGACAAA AAATGTGGAT CACAAACGCT GGTTTTGCAG ACACGTTTAT TGTCTTTGCT
CAGATTGATG GCGATAAGTT CACAGGTTTT ATCGTTGAGA AAGGTGAAGG CGTTACACTT
GGTAACGAAG AGCACAAAAT GGGTATCAAA GGTTCTTCTA CCCGTCAGGT TTTCTTTAAC
GACTGCAAAG TACCGAAAGA AAATGTGTTA GGAGAAATTG GTAAAGGACA CTTGATTGCA
TTCAACATTT TAAATATCGG ACGTATTAAA TTGGCCGCTG CCGCCTTAGG TGGTTCAACA
CGTGTAAGCA CACTTTCAAT CCAATACGCA AAAGAACGTA TTCAATTCAA ACAACCGATC
GCAAACTTCG GTGCCATTCA ATATAAATTA GCAGAACAGG CAATTAAGAT CTATACCGTT
CAGTCTGCCA TGTACCGTGC CGGACAAGGC ATTCAGGATG CAGAAGAAGA ATTGGTGAAA
CAAGGTAAGA CTTACGAAGA AGCCTTATTA GCTGCTGCGC AGGAATATGC CATCGAATGT
GCCATGTTAA AAGTTGCAGG TTCTGAAACA TTGGATTATG TAAGTGATGA AGGCGTTCAG
ATCTTAGGTG GTTATGGTTT CTCTGCCGAT TATCCGATGG ACCGTTCGTA CAGAGATTCC
CGTATCAACC GTATTTTCGA AGGGACGAAT GAGATCAACC GTATGCTTAC GATGGATATG
TTCCTGAAGA AAGCAATGAA AGGCGAACTG GATCTAATGG GCCCTGCCAT GGCGGTGCAG
AAAGAGTTGA TGGCGATCCC TGATTTTGGT GCAGAAGACG AAGGTCTGTT TGCAGATGAA
AAGAAAGCGA TCAAAAACAT GAAGAAAGCA TTATTAATGC TTGCAGGTGC TGCTGCTCAA
AAGTACATGG ATAAGCTTGC CACAGAGCAG GAGATCTTAA TGAACCTTGC CGATATTGCA
ATCGACATTT ATGTTGCTGA ATCTACCTTA CTTCGTACAG AAAAATTAAT TTCTATTAAA
GGCGAAGATG CAGTGAAAGG TCAGATCGAT ATGACGAAAG TGAATATATT TGATGCTGCA
GACCGCATTA ACATTGCAGG TAAAAACGCG ATCAACTCTA TGTCAGATGG CGACATGCAA
CGTATGATGT TGATGGGCTT GAAGCGTTTT ACAAAAGTAG CGCCGTTAAA TACGAAAGAT
GCTAGAAGAA GAATCGCTGC TCAATTGATT GAGGCGAATC AGTATTGTTT CTAA
|
|---|
| Protein sequence | MSTSSTSTDK RFKGGEYIIR EQEASSIFIP EQFDEEQKMM ADMARDFLAT EVHPILDRID
AQEPGLMEKL LEKAGELGLL ATSIPEQYEG FGKDFNTSLL LTEIVGAGHS FAVALAAHTG
IGTLPILYFG TEEQKKKYLP KLASGEWKAS YCLTEPGSGS DALAAKTKAV LSADGSHYIL
NGQKMWITNA GFADTFIVFA QIDGDKFTGF IVEKGEGVTL GNEEHKMGIK GSSTRQVFFN
DCKVPKENVL GEIGKGHLIA FNILNIGRIK LAAAALGGST RVSTLSIQYA KERIQFKQPI
ANFGAIQYKL AEQAIKIYTV QSAMYRAGQG IQDAEEELVK QGKTYEEALL AAAQEYAIEC
AMLKVAGSET LDYVSDEGVQ ILGGYGFSAD YPMDRSYRDS RINRIFEGTN EINRMLTMDM
FLKKAMKGEL DLMGPAMAVQ KELMAIPDFG AEDEGLFADE KKAIKNMKKA LLMLAGAAAQ
KYMDKLATEQ EILMNLADIA IDIYVAESTL LRTEKLISIK GEDAVKGQID MTKVNIFDAA
DRINIAGKNA INSMSDGDMQ RMMLMGLKRF TKVAPLNTKD ARRRIAAQLI EANQYCF
|
|---|
| |