| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3562 |
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| Symbol | rpoE |
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| ID | 4184399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 4111897 |
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| End bp | 4112424 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638073549 |
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| Product | ECF subfamily RNA polymerase sigma factor |
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| Protein accession | YP_680138 |
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| Protein GI | 110639928 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGTTTCACA CCTATTACAA AACACTTTGC CGTTTTTCTT TTCGCATTGT ACACGACAAA
GAAAAAGCCG AAGATGTTGT TCAATCCTGC TTTATAAATT TTTGGCAAAA GAGAGATCAG
TTAACCCTGC ACGCTTCCTT TAAGTCTTAT TTATTCAGGG CAGTATATAA CAGAAGCATC
AATGAATACA ATCAATCTAA AAAGACCAGC CATCAGGAAT TATCTGTATT AGAAGAAGAA
AGCAGCTCCA GGTCAGATGA TCCGCTGCTG CAATTGCAGG CGCTGGAACT GGAGCAGAAA
ATTGCTTATG CCATCGGATC CATGCCGGAA GGCTGCAGAA CCATTTTTTT GCTGAGTCGC
GAAGAACAGC TGTCATATAA AGAAATCGCC GAAATGCTGG AAATTTCAAT AAAAACAGTT
GAAAACCAAA TGGGTAAAGC ATTAAAAATC ATGAGGGAAC ATCTTTTTAC CGCATGCATG
CTGGTGTTTT TATATGAAAC AATTGCAGAA ATTTTATTTA TCGGATAG
|
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| Protein sequence | MFHTYYKTLC RFSFRIVHDK EKAEDVVQSC FINFWQKRDQ LTLHASFKSY LFRAVYNRSI
NEYNQSKKTS HQELSVLEEE SSSRSDDPLL QLQALELEQK IAYAIGSMPE GCRTIFLLSR
EEQLSYKEIA EMLEISIKTV ENQMGKALKI MREHLFTACM LVFLYETIAE ILFIG
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