Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3546 |
Symbol | cpxA |
ID | 4186600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 4100646 |
End bp | 4102406 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638073533 |
Product | sensor protein (histidine protein kinase), acting on arcA |
Protein accession | YP_680122 |
Protein GI | 110639912 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00933538 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0548176 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTAAAAT GCATTTTTGT TGCATCATTG TTTATATTAA TATTCATTTC AACATTTACG TATAAGCACT CTACAGGCCT CATTCATTCA TCCAAACGCT TAATTCATTC GCATAAAGTA AATCTGGAGC TGGAGCAATT AAACTCGCTG CTTAAAGATG TTGAAATTAA TCAAACGGCT TATTTCATTT CAAGAGACAC CACTTTCCTT TCTGCATTTA ATAATTCAAG AACCCGCATA AGCCAATCTA TAAACAGACT GCAGGGTTTG ACACAGGATA ATTTAAAACA ACAGAACAAT TTAGATTCTC TTGTAAAACT CATAAAGGTT CGATACAATA TTCTTTTTGA GAACTCCATT AATCTAAATG ACTCTGTGCC CGTAAATGCA AAGCGCTTTA ACAAGAGTTT GATAGACGGG AAGGCTGTAA TGCGCACAAT CCGCAGTCAG ATTAACCAGA TGATCGAGCT GGAAAATATT TATTTAGTAG AACGGCAGGA AAAGTATGAG AACGAATCGT TTCTTACTCC ATTCTATTCC TTAATGCTGT TATTGTTTTC TTTAATCGTA TTTATTTTTT CATATTATAA AATAAGCCGC GATTTAGAAT CGCTTAAAAA GTCAAACCTT GTTCTGAAAA TTGCTACCGA AACGATGAAA CATGCCGAAG AGATCGGCGG TTTCAGTAGT TGGCAATGGG ATCTGGCCAC GAATAAATTT ATCTATTCCG ACAATCAGCA CCGTTTACTT GGAGTTGAAC GGGATTCATT TGAATCAAGC AATGATGCAT TTATTAATTT TGTGCATCCG GAAGACAGGC ATGTTATAAA AAATGGAGAG CGAATGGTAT TGGATGAACA GCAATCCAGT GTCGCATTCT TCAGAGTGAT CCGGAAAGAT GGCCAAATGA GGTACTTTAA ATCTATTGGC AAGCTTCTTA CCGATTCTTC AGGCAATAAA ATTCTCATTG GTATAAACAA TGATATCACA GAAGAACATC TGGTGAGCAA ATCGCTGGAA GACCGAAACA GTGAATTAGA AAAAAGCAAT AAAGAACTGG CATCCTTCAA CCACGTTGCC AGCCATGACC TTCAGGAGCC GCTTAGAAAA ATTCAAACAT TTATTTCGCG GATATATGAG AAAGAAAGCA GCAATCTATC ACAGCAAGGA AAAGATTACC TGGAAAGGAT ACAGATTGCA GCAAAACGCA TGCGTGTATT GATAGATGAT CTGCTATTAT TTTCACGAAC AAATAAAGTT GAAAAAATAT TTGAACACAC AGACCTCAAT CTGTTGCTGG ATGAGGCAAT ACAGGAACTG ACGCAGCAAA TAGAAGAGAC GGGAGCAACG ATTTCTTCAG ATCCTTTGCC GCAACTTATT ATAATACCGT TCCAGATTCA ACAGTTATTT ATAAATCTGA TTGCAAATTC TTTAAAATAC AGCAAGCCAG ATGTGCCGCC GGCAATTAAA ATTGAAAGCT CTATTATCAA TTCCAATGAT TATGAAGCAA TTATTAAAGA AAAGAATAAA GAGTTTTATA AAATATCCAT TATGGATAAC GGACTGGGTT TTGATCAGGA ATACGAAGAG GCGATTTTTA CATTATTTTA TCGTTTGCAT AACAATTCAG ACTATCCGGG AACAGGAATA GGCCTGGCTA TCTGTAAAAA AATTGTTGAA AATCATAAAG GTTACATCAG AGCAGAAAGC GTTCCAGGCA AAGGATCTGT CTTTAGTTTT TTCCTGCCGC TGTATCATTA A
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Protein sequence | MLKCIFVASL FILIFISTFT YKHSTGLIHS SKRLIHSHKV NLELEQLNSL LKDVEINQTA YFISRDTTFL SAFNNSRTRI SQSINRLQGL TQDNLKQQNN LDSLVKLIKV RYNILFENSI NLNDSVPVNA KRFNKSLIDG KAVMRTIRSQ INQMIELENI YLVERQEKYE NESFLTPFYS LMLLLFSLIV FIFSYYKISR DLESLKKSNL VLKIATETMK HAEEIGGFSS WQWDLATNKF IYSDNQHRLL GVERDSFESS NDAFINFVHP EDRHVIKNGE RMVLDEQQSS VAFFRVIRKD GQMRYFKSIG KLLTDSSGNK ILIGINNDIT EEHLVSKSLE DRNSELEKSN KELASFNHVA SHDLQEPLRK IQTFISRIYE KESSNLSQQG KDYLERIQIA AKRMRVLIDD LLLFSRTNKV EKIFEHTDLN LLLDEAIQEL TQQIEETGAT ISSDPLPQLI IIPFQIQQLF INLIANSLKY SKPDVPPAIK IESSIINSND YEAIIKEKNK EFYKISIMDN GLGFDQEYEE AIFTLFYRLH NNSDYPGTGI GLAICKKIVE NHKGYIRAES VPGKGSVFSF FLPLYH
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