Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3525 |
Symbol | lhr |
ID | 4183548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 4079677 |
End bp | 4082118 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638073512 |
Product | ATP-dependent helicase |
Protein accession | YP_680101 |
Protein GI | 110639891 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.790259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAAA AAGAAATACT TGCCTGGTTT AAAAATCAAA AATGGAAACC GCACCTGTTT CAGCAGGATA CCTGGAAGGC CATGCTGGAA GGCTATTCCG GACTGGTTAA TGCACCAACG GGAAGCGGTA AAACGTATTC TGTATGGTTT GGGATTTTGT TGGAATACCT GCAAAAACAT CCCGATTATA AAACAAAAAC AAAGCAAGGC CTGCAAGCGA TCTGGATCAC GCCGATCCGG GCGCTGGCCA AAGAGATTGA ATATTCAACA AAACGTTCCT GCATAGATCT GGATATTCCC TTTGAAGTAG CCATACGCAG CGGGGATACG ACTTCCGCAC AAAAAACAAA ACAGAAAAAA AACATGCCGC AGCTGCTGGT AACCACACCG GAAAGTTTGC ACCTGTTGCT TTCACAAAAA GGCTATGCGG ATGTATTTAA AAATCTGTCG ACCGTAGTGG TAGATGAATG GCATGAACTG ATCGGGTCTA AACGCGGTGT TCAGATGGAA CTTGCCTTAT CTCGGCTGAA AGGATTAAAT CCGATGCTGA AGATCTGGGG AATCTCTGCA ACCATAGGCA ACCTGGAAGA AGCCAAGGAT GTGCTGCTTG GTAAGTATGG AAACCCGACA AAGATGATCC GTGCAGAATT GCCGAAGCGG GTTGAGATCG AAACCGTATT TCCCGATAAA ATCGAAAACT TTCCCTGGTC GGGTTTTGTA GGAACGAAGC TGGTACCCAA AGTAATACCG ATCATACATA ATAGTCATTC TGTTTTAATT TTTACCAATA CCCGTTCACA ATCTGAGATC TGGTACCGGC AGCTGCTGGA CGTGGCGCCG GAATTTGCCG GGCTAATTGC ACTGCACCAC GGTTCCCTGG ATCAGAAGAC ACGTACCTGG GTAGAAGATA ACCTGCATGC AGGAAAATTA AAAGCGGTGA TCTGTACATC CAGTTTAGAC TTAGGTGTAG ATTTCAGTGC AGTTGATACG GTAGTTCAGG TAGGAAGTCC CAAAGGAGTT GCGCGGTTTA TGCAACGGGC GGGCAGGAGC GGCCACAGTC CGGGTGCGTT GAGTAAGATC TATTTTGTGC CGACCAATTC ACTTGAGATC ATTGAAGGCG CTGCTATGCG CGAAGCCATC AAACGCAATG TGGTAGAGAG CCGTGTTCCC TATGTCAGAA GCTTTGATGT GCTGGTACAA TACCTGGTAA CGCTGGCCGT ATCGGATGGT TTCCGGCCGG AAATTATTTA CGAAGAAATT AAAAAAACAT TTTGTTATGC CAGTGTAACC CCGGAAGAAT TTGCCTGGGC TCTGCAATTC ATTACCAACG GGGGCAACTC ACTTGATGCA TACGACGAGT TTCATAAAGT AATTATTGAA GAAGGTATTT ATAAAGTAAC GAGCCGCGCC ATTGCCACCA GGCACCGGCT TTCCATGGGT ACCATCGTAA GCGATTCTGC CATGCAGGTG AAATACATGA GCGGGAAACG GCTGGGCAGT ATTGAAGAAA GTTTCATTTC AAAATTAAAA CCCGGAGACG TATTCTGGTT CTCCGGAAAT AACCTGGAGA TCGTACACAT TCACCACATG GATGTGCTGG TACGGAAAAG TAAAGCAAAA AAAGGAATGA TCCCGAGCTG GCAGGGCGGG CGTATGCCTT TGTCTTCTCA GCTTGCCGAA ATGATCCGCT ATAAGATCGA TCATTTTTTT GATGCCGGTG CAATTGAAGA AGAAGAACTT AATAAACTAA AAGAACTGTT TGACCTGCAG GCGAAACGTT CGCACTTACC GACCAATAAA GAATTTCTGA TCGAGTATGT ACAGAGCCGC GAAGGATATC ATGTATTTAT GTATCCGTTT GAAGGCAGGT TTGTACACGA AGGAATGGCG GCGATTGTAT CGCATAAAAT TTCGGAAATC CAGCCTATAA CGTTTTCGGT GGCGATGAAT GATTATGGGT TTGAATTATT ATCCGATCAG GAAATTCCGA TTGAAGAAGC ATTGGAGCTT GATCTGTTTA ATATTGACAA TCTGGAAAAA GAAATTCAGT TAAGTGTAAA TGCAACTGAG ATGGCGCGCC GCCGCTTCCG CGAAATTGCT TCTATCGCCG GACTGGTATT TCAGGGCTAT CCCGGAAAAT CTGCGAAGAC ACGGCACCTG CAGGCCAATG CCGAATTGTT TTTCAAAGTA TTTGAACAAT ATGACAGCAA TAATCTGTTA TTGCGGCAGG CATATGATGA AGTGCTGGAT TTTCAGTTAG AGATCCGCCG GATGCGTAAA GCCTATAACC GTATTAATGA GCAGAAGCTT GTACTGGTAA GGCCTGACAA ACCAACACCG TTTGCATACC CGATCATGGT CGACCGCATG CGCGGGAAGT TCAGCAATGA AAAACTGGAG GACCGTTTAT TTAAAATGAA AACACAACTG GAAAAAGAAT AA
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Protein sequence | MTQKEILAWF KNQKWKPHLF QQDTWKAMLE GYSGLVNAPT GSGKTYSVWF GILLEYLQKH PDYKTKTKQG LQAIWITPIR ALAKEIEYST KRSCIDLDIP FEVAIRSGDT TSAQKTKQKK NMPQLLVTTP ESLHLLLSQK GYADVFKNLS TVVVDEWHEL IGSKRGVQME LALSRLKGLN PMLKIWGISA TIGNLEEAKD VLLGKYGNPT KMIRAELPKR VEIETVFPDK IENFPWSGFV GTKLVPKVIP IIHNSHSVLI FTNTRSQSEI WYRQLLDVAP EFAGLIALHH GSLDQKTRTW VEDNLHAGKL KAVICTSSLD LGVDFSAVDT VVQVGSPKGV ARFMQRAGRS GHSPGALSKI YFVPTNSLEI IEGAAMREAI KRNVVESRVP YVRSFDVLVQ YLVTLAVSDG FRPEIIYEEI KKTFCYASVT PEEFAWALQF ITNGGNSLDA YDEFHKVIIE EGIYKVTSRA IATRHRLSMG TIVSDSAMQV KYMSGKRLGS IEESFISKLK PGDVFWFSGN NLEIVHIHHM DVLVRKSKAK KGMIPSWQGG RMPLSSQLAE MIRYKIDHFF DAGAIEEEEL NKLKELFDLQ AKRSHLPTNK EFLIEYVQSR EGYHVFMYPF EGRFVHEGMA AIVSHKISEI QPITFSVAMN DYGFELLSDQ EIPIEEALEL DLFNIDNLEK EIQLSVNATE MARRRFREIA SIAGLVFQGY PGKSAKTRHL QANAELFFKV FEQYDSNNLL LRQAYDEVLD FQLEIRRMRK AYNRINEQKL VLVRPDKPTP FAYPIMVDRM RGKFSNEKLE DRLFKMKTQL EKE
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