Gene CHU_3524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3524 
Symbol 
ID4183547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp4078064 
End bp4079680 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content45% 
IMG OID638073511 
ProductATP-dependent DNA ligase 
Protein accessionYP_680100 
Protein GI110639890 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR00574] DNA ligase I, ATP-dependent (dnl1) 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.755693 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGT TCGCTGAATT GTTTACGGAG CTGGATCAGA CCACCAGGAC AAATGCAAAA 
ATAGATGCCC TGGCCGACTA CTTTGCGGTG TCTGATGCAG CAGATGCTTT ATGGGCTGTA
GCTTTATTAA CAGGGAAAAA ACCAAAGCGT ACCGTGAAGA CTTCCGAATT GAAGCTCTGG
TCCATGGAAC TTTCCGGTGT AAACGAATGG CTGTTCGAAG AATCCTATCA TGTAGTCGGT
GATCTGGCAG AAACAATTAC CTTATTGCTG CCCGCTGCTG AAACACAAGC CGATTATTCA
TTAAGTGGCA TGATGGCCTT ATTGAAAACG CTTGATACAA AAACAGAAGA ACAGCGGAAG
AATATTATTC AGGAAATCTG GATGCAGCTC AGCACAGCCG AACGGTTCGT GTTCAACAAA
CTTATTACCG GAAGTTTTCG CGTGGGCGTT TCTCAGCAAC TGGTGATTAA GGCACTGGCA
AAAAATTACA AGCTTGTTGA AAGCAACGTA GCACACCGCC TTATGGGTAA CTGGCTTCCG
GATACTTCAA CGTTAGATAA TTTATTATTC AATACAGATA TACAAGAAGA TCTTTCAAAA
CCGTATCCGT TTTATCTGGC TTATCAGCTG GATGTACCGG CGGAAACGCT GGGAGATATT
ACAGCGTGGC AGATCGAATA TAAATACGAC GGCATCCGCG GACAGATTAT TGTGCGTCGC
GGTGAACTAT TTGTATGGTC CAGAGGAGAA GAACTGATGA CGGATAAATT TCCGGAGTTT
GAACGGTTAA AAGAAGCCTT ACCCGACGGC ACAGTGATTG ACGGCGAGAT TCTTCCGTTT
AATGGAAATG AACCGATGCC GTTTCATATT ATGCAGACAC GCATCGGCAG GAAAAATCTT
TCGAAAAAAA GTTTAGCAGA TGCACCGCTT GCCATGATGT GTTATGACCT GCTGGAATAT
AAAGGCAATG ATGTACGTCT GCTGCCGATG AGTGAACGCA GGGCCCTGCT GGAAAATTTA
CTGAAAGAAC TGGCAGAAAA AAATTCAGCC GCGGCAGCGG TATTAAAATT ATCGCCGGTG
TTTGTGTGCA AAACAGTTGA AGAAATGGTT TTGTTACGGC TTGCATCACG CGACCGGATG
TGCGAAGGCT TAATGCTGAA ACACAAAGAC AGTTTGTATG AAGCAGGCAG AAGAAGAGGC
AAGTGGTGGA AATGGAAAAT TGATCCGCTA ACGGTTGATG GTGTACTGCT TTATGCACAG
CGCGGCCATG GACGAAGAGC AGATCTGTAT ACCGATTATA CGTTTGCGGT TTGGAGCGGA
GAAGAACTTG TTCCGTTTGC CAAAGCCTAT TCCGGGTTAA CGGATAAAGA ATTAGTAGAA
GTAGATAACT GGGTAAAAAA GAATACCAAG GAAAAATTTG GTCCGGTACG AAGCGTTACA
CCGGAGCTGG TATTTGAAAT TGCCTTTGAA GGAATTAATC CATCGCCGCG GCATAAATCC
GGCGTGGCGC TGCGGTTCCC GCGGATTCTG CGCTGGCGGA AAGACAAGGG CATAAAAGAT
GCAAACAGTA AAGAAGATCT TTTGCATTTG ATTCAGCAAT TAAACCGTAC GGCATGA
 
Protein sequence
MKKFAELFTE LDQTTRTNAK IDALADYFAV SDAADALWAV ALLTGKKPKR TVKTSELKLW 
SMELSGVNEW LFEESYHVVG DLAETITLLL PAAETQADYS LSGMMALLKT LDTKTEEQRK
NIIQEIWMQL STAERFVFNK LITGSFRVGV SQQLVIKALA KNYKLVESNV AHRLMGNWLP
DTSTLDNLLF NTDIQEDLSK PYPFYLAYQL DVPAETLGDI TAWQIEYKYD GIRGQIIVRR
GELFVWSRGE ELMTDKFPEF ERLKEALPDG TVIDGEILPF NGNEPMPFHI MQTRIGRKNL
SKKSLADAPL AMMCYDLLEY KGNDVRLLPM SERRALLENL LKELAEKNSA AAAVLKLSPV
FVCKTVEEMV LLRLASRDRM CEGLMLKHKD SLYEAGRRRG KWWKWKIDPL TVDGVLLYAQ
RGHGRRADLY TDYTFAVWSG EELVPFAKAY SGLTDKELVE VDNWVKKNTK EKFGPVRSVT
PELVFEIAFE GINPSPRHKS GVALRFPRIL RWRKDKGIKD ANSKEDLLHL IQQLNRTA