Gene CHU_3481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3481 
Symbol 
ID4184901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp4028444 
End bp4029265 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content41% 
IMG OID638073469 
Productpermease 
Protein accessionYP_680058 
Protein GI110639848 
COG category[R] General function prediction only 
COG ID[COG2962] Predicted permeases 
TIGRFAM ID[TIGR00688] rarD protein 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0516361 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAACAG GTATCCGTTA CATGCTTCTC TCGATCGTAT CGTTTTCTCT CATGCATTTA 
TGCGTGAAAG CGATCCCGGA CATTCCTGTT GTACAAACGA TTTTTCTAAG ATCCGTTTTC
TCAATCGTAT TTTGTTGTAT CGCGATTAAA CAAGCTAAGG TTTCTGTTTG GGGAAATAAT
AAAACATTTC TCGTCTTGCG TGGTTTGGTC GGCATGCTTT CCCTCATCTG TTTTTTCTAT
TCCATACAAA TGCTTCCCTT GGGAACAGCT GTAACCATCG GCAATCTGGT TCCTTTCTTT
ACGTTATTTC TGGCCTTCGT TTTTCTGAAA GAAAAAATAC CGCACATAAA ATGGCTGTTC
TTCGCTGTTT CCTTTGTGGG TGTTTTGCTG ATGAAAGGCC TTGATGATGA ACTCCCGGCA
TTGGGAATTA TATTAGGTTT ATGCGCAGCT TTCTTTACAG CAACCGCGCA CTTTGTAGTC
CGCAAACTGC GCGACACCGA CGACACATCG GTGATCATGT TTTACTTTCC ATTCATTACT
ATTCCATTCA TGTTGCCTTT TGCAATTCTG CAATGGGAAA CACCAGATGC ACGGGAATGG
TTGTTTTTAG TTTTGATCGG AATCACTACA CACGTTGGCC AACTCTTTCT GACAAAAGCC
TATAAACACG AAGAAGTTAA AAATATTTCG TATGTATACT ATCTGGGCAT CATACTTTCC
TTTGTCTATG GAGTTTCTTT TTTCGGAGAG TTCATCAGTG TCAAATCCTC CGTTGGTGTG
GGGTTGGTGA TTTTGGGAAT GGTATTGAAT ATGTTGGGGT AG
 
Protein sequence
MSTGIRYMLL SIVSFSLMHL CVKAIPDIPV VQTIFLRSVF SIVFCCIAIK QAKVSVWGNN 
KTFLVLRGLV GMLSLICFFY SIQMLPLGTA VTIGNLVPFF TLFLAFVFLK EKIPHIKWLF
FAVSFVGVLL MKGLDDELPA LGIILGLCAA FFTATAHFVV RKLRDTDDTS VIMFYFPFIT
IPFMLPFAIL QWETPDAREW LFLVLIGITT HVGQLFLTKA YKHEEVKNIS YVYYLGIILS
FVYGVSFFGE FISVKSSVGV GLVILGMVLN MLG