| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3480 |
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| Symbol | rluD |
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| ID | 4184900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 4027283 |
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| End bp | 4028329 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638073468 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_680057 |
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| Protein GI | 110639847 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0583016 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAA ATGAAATACC GGAAGAATTA GAAGACGGCT TTAGTGAAGA CGAATTATTT
GAGCACCATC GGGTTGTTTG CGACCCGGGT CAGTCTCTTA TGCGCATCGA TAAGTTTTTA
ATGTCGCGTA TTCAGTACGC TACCCGTTCG CGTATACAAT ATGGTATTGA AATAGACTCT
GTTAAAGTAA ACGATAAATC AACTAAAGCA AGCTATAAAG TCAGACCCGG CGACGTCATT
ACCATTTCTC TGCCGCATCC GCCACGCGAA GATGTATTGA TCCCGGAAGA TATTCCGCTT
GATATTGTCT ATGAAGATGA TCAGATCCTG ATCGTAAATA AAAAACCAGG GATGGTTGTA
CATCCTGCGC ATGGTAACTG GACAGGTACG TTGGTAAATG CATTGGCATA TCACTTTGAA
AACCTGCCTA CACACGTGAA CGGAAAAATC CGTCCGGGTT TGATCCACCG TATTGATAAA
GATACTTCGG GTTTATTGGT AATTGCAAAA ACAGATTACG CCATGACCTT TATGGCAAAA
CAATTTGCGG ACCACAGCAT AGAACGTACC TATTATGCCA TTTGCTGGGG CGTGCCGGAT
CCTAAAAGCG GTACCATTAA AAATTATTTA GGCAGAAGTA CAAAAGACCG CAAACTCGTA
ACTACTTACG AAAACGAAGA AGACGGCAAG CTTGCCATTA CGCATTACAA AACACTGGCT
GCCTATCATT ATGTAGCCTT GATCCAGTGT AACCTGGAAA CGGGAAGAAC ACATCAGATC
CGTGCGCACA TGAAATCCAT CGGTCATTCG CTTTTTAATG ACATGAGTTA TGGCGGTAAT
TCAGTTGTCA AAGGCACTGT AACAGGTAAA TACAAACAGT TTGTTGAAAA TTGCTTTAAG
TTATTGCCTC GTCAGGCACT GCATGCAAAA ACACTGGGCT TCATACATCC TACAACGAAA
GAAAAAATGC AGTTTGATAG CGAACTTCCG GCAGACATGC AGGCGGTACT GGATAAGTGG
GAACGTTATG TGGGCGAAGA AAAGTAG
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| Protein sequence | MAENEIPEEL EDGFSEDELF EHHRVVCDPG QSLMRIDKFL MSRIQYATRS RIQYGIEIDS
VKVNDKSTKA SYKVRPGDVI TISLPHPPRE DVLIPEDIPL DIVYEDDQIL IVNKKPGMVV
HPAHGNWTGT LVNALAYHFE NLPTHVNGKI RPGLIHRIDK DTSGLLVIAK TDYAMTFMAK
QFADHSIERT YYAICWGVPD PKSGTIKNYL GRSTKDRKLV TTYENEEDGK LAITHYKTLA
AYHYVALIQC NLETGRTHQI RAHMKSIGHS LFNDMSYGGN SVVKGTVTGK YKQFVENCFK
LLPRQALHAK TLGFIHPTTK EKMQFDSELP ADMQAVLDKW ERYVGEEK
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