| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3476 |
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| Symbol | dapE |
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| ID | 4184896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 4022082 |
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| End bp | 4023461 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638073464 |
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| Product | peptidase family M20/M25/M40 domain-containing protein |
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| Protein accession | YP_680053 |
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| Protein GI | 110639843 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.128443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCAAC TTACTGCTGC TTCTGTTTCT ACTTATGTAG AACAACATAA AGATCGTTTT
ATTGGTGAAT TATGTGACTG GCTGAAAATA CCATCTGTGA GTGCAGATAA GAAATTCAAA
GCAGATGTAT TGCGGGCTGC AGAATTTGCG AAAGAGCAAT TTTTAAAAGC AGGTGCAGAT
AAAGCAGAGC TGTGTGAAAC AGGCGGTAAT CCGGTTGTGT ATGCAGAGAA ATTTGTTGAT
GCATCCAAAC CCACGATTCT GGTTTACGGA CATTACGATG TGCAGCCTGC CGATCCGTAC
GAGCTATGGA CTTCGCCACC CTTTGCACCT GTAATTAAAG ACGGAAACAT TTATGCCCGT
GGTGCCTGTG ATGACAAAGG CCAGGTGTAC ATGCACATCA AAGCACTGGA GATTTTAACG
GCAATGAACG ATGTTCCCTG TAACATCAAA TTCATGATCG AAGGCGAAGA AGAAGTTGGT
TCCGATAACC TTGGTCCGTT TTTAGAAAAA AATAAGGAGA AGCTGAAAGC AGATGTGATC
CTGGTTTCAG ATACAGCAAT CTTTTCGGTG GATACACCTT CTATTACAAT CGGTTTGCGT
GGTTTAAGTT ATTTAGAAGT GAAAGTTACC GGCCCCAATA GAGATCTGCA CTCGGGTGTA
TACGGCGGTG CTGTTGCTAA CCCGATCAAC ATTCTCTGTG AGATGATCGC CGGAATGAAA
GATGAGAATA ACCACATTGT GATTCCGGGT TTTTATGGAG ATGTACTTGA ATTGAGTGAA
GCAGACCGCA AAGCATTGAA TAGTGCGCCA TTCAATTTAG ATAACTATAA AAAGGCATTG
GATATCGCCG ATGTGGAAGG TGAAAAAGGA TTCACTACGC TGGAAAGAAC TTCTATCCGT
CCGACCTTGG ATGTAAACGG AATCTGGGGC GGATACACAG GCGAAGGAGC AAAAACTGTT
TTGCCTTCCG TTGCGCAGGC AAAGATCTCC ATGCGTCTGG TACCAAATCA AACGCCGGAT
AAAATCACGC AGCTGTTTAC AGATTATTTC AAACGTATTG CGCCGGCTTC GGTAAAGGTT
GAAGTAACAC CGCATCATGG CGGAGAGCCC GCAATCACAC CTACCGACAG TGCCGGTTAC
AGAGCTGCCG AAGCAGCATT TGCAGAAGCC TGGAACAAAA AACCAATCCC GATGCGTGAA
GGCGGAAGTA TTCCGATTGT AGCATTATTT GAACGCGTAT TGGGTTTAAA GACCGTATTG
ATGGGATTTG GTCTGGATTC AGATGCGATT CATTCGCCAA ACGAACATTA CCGCGTATTT
AATTACCTGA AAGGAATTGA AACGATTGTG TTGTTTCACA AATATTTCGG ACAGAAATAA
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| Protein sequence | MSQLTAASVS TYVEQHKDRF IGELCDWLKI PSVSADKKFK ADVLRAAEFA KEQFLKAGAD
KAELCETGGN PVVYAEKFVD ASKPTILVYG HYDVQPADPY ELWTSPPFAP VIKDGNIYAR
GACDDKGQVY MHIKALEILT AMNDVPCNIK FMIEGEEEVG SDNLGPFLEK NKEKLKADVI
LVSDTAIFSV DTPSITIGLR GLSYLEVKVT GPNRDLHSGV YGGAVANPIN ILCEMIAGMK
DENNHIVIPG FYGDVLELSE ADRKALNSAP FNLDNYKKAL DIADVEGEKG FTTLERTSIR
PTLDVNGIWG GYTGEGAKTV LPSVAQAKIS MRLVPNQTPD KITQLFTDYF KRIAPASVKV
EVTPHHGGEP AITPTDSAGY RAAEAAFAEA WNKKPIPMRE GGSIPIVALF ERVLGLKTVL
MGFGLDSDAI HSPNEHYRVF NYLKGIETIV LFHKYFGQK
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