Gene CHU_3453 details

Gene Information

• Locus tag: CHU_3453
• Symbol: mfd
• ID: 4186031
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: +
• Start bp: 3994066
• End bp: 3997434
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638073441
• Product: transcription-repair coupling factor
• Protein accession: YP_680030
• Protein GI: 110639820
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1197] Transcription-repair coupling factor (superfamily II helicase)
• TIGRFAM ID: [TIGR00580] transcription-repair coupling factor (mfd)

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.0209077
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGAAGGTTA CTGAATTATT GAACATATAT GAGAAAGATT CTCATATTCA GCTATTGAAA 
CAAAAGCTTC AGGAAAGGGA AAATAACGCG CTCTTTTTAA AAGGTTTGTC AGGCAGTATG 
GATGCGCTCA TTGCAGCCGC TCTTTCAAAA TCTGATAAAA AATCGCATGT TTTTATATTA 
GCGGATAAAG ACGAAGCATA TTTTTTTCAA AATGATTTAC AGCAATTGCT TGGACTGCCT 
GTTTTTGTTT TTCCGGCTTC CTATAAGAAA CCATATCACT ACGAGCAGGT TGAAAATGCA 
AATATTCTGC AGCGTGCTGA AACGTTAAAC TACATTATTA ACAACCAGGA TAAGCCTTCT 
TATCTGGTTA CATATCCGCT GGCGCTTTCT GAAAAGGTAA TCAATAAACG CTCCTTAGTA 
GAAAACACCT TTATTGCCCG TATTGGAGAA AAACTCAACC GGGAATTCAT GGAAGAGTTT 
CTGCAAAGCT ATGGTTTTGA GCGTACGGAT TTTGTGTATG AGGCCGGGCA ATATGCAATT 
CGTGGTGGTA TCATTGACAT CTTTTCTTAT GCAAATGAAT TGCCGTTCCG GATTGAACTC 
TTTGGAACAG AGATTGAAAG CATCCGGACA TTTAATCCTG AATCTCAGCT TTCCGTAGAT 
AACATTCCTG TTTTATCTAT CACACCAAAT GTACAGACAC GTTTGCTGAA AGAAGAACGT 
GAGTCGCTGT TTACATTTCT CCCCGCAGAT ACTACGCTTT GGATCAAAGA TTACGCACTT 
ACTACAGAAA TTATCGAAGA GTGCTTCTCT AAAGTTGAAA GTCAGTTTGA TACTATTCTT 
TCCTCCACCG GCAACAGTGC ACTGCTTACT TCTCCTGATG CGCTGTTTGA AGATAAATAT 
TCTTTTGAAA AAAGCATTGA AGCTTATTCC ATTATAGAAT TTGGTCCGCA CTCGTATATA 
CCCAATGCAA CACGCATTGA GTTTGAAGCA AAACCTCAGC CGTCTTTCAA CAAAGAATTT 
AATTTACTGC TCGAAGATTT CAGACTGCGT ATCAATCAAG GGTATAAAAT TATCATTGCT 
TCTGAGTCTC ATCAACAGAT TCAGCGGCTG CATTCCATTC TTGAAGAGCT TGATCCCTAT 
ATCCGTTTTG AGGAAATGAT CATTCCGTTA CGCGAAGGAT TTATTGACTT ACAGCGTAAT 
ATTCTGTGTT ATACCGATCA CCAGATCTTT GACCGCTTCC ACCGATATAA AACCAAAGAA 
CGTTTTTCCA AATCAAAGTC TATTACACTG AAGGAATTAC GCACGCTGCA GCCGGGTGAT 
TTTGTTGCCC ACGCAGATTT TGGAATTGCA CGTTTTGCCG GTCTGGAACG CATTGAAAAT 
AACGGACACA CGCAGGAGGC TATCCGCCTG GTGTTCCGGG ATGATGATCT GATGGTTATA 
TCCATTCATG CCTTACATAA AATTTCCCGC TATAGTGGTA AAGACGGCCA GCCGCCTGTC 
ATGTCTAAAC TTGGCTCAGG TGATTGGGAA AATAAAAAGA GCAAAGTTAA ACGTCAGGTT 
AAAGACATTG CCAAAGAACT CATTCAATTG TATGCAAAAC GAAAAGCCGC TCCTGGTTTT 
GCATACACGC CTGATTCCTT TTTACAGGTA GAGCTTGAAT CTTCTTTTAT GTATGAAGAT 
ACACCTGATC AGAGCAAAGC AACAGCAGAT GTTAAAAAAG ACATGGAGTC GCCGCACCCC 
ATGGACAGGC TTGTTTGCGG GGATGTAGGT TTTGGTAAAA CAGAAATAGC CGTGCGCGCT 
GCCTTTAAAG CCGTGTGCGA TGGCAAGCAG GTTGCTGTAT TGGTGCCAAC CACAATTCTG 
GCCATGCAGC ATTACAAAAC GTTCAGAGAT CGTTTATCCC GGTTCCCCTG TGTAGTTGAA 
TACATTAACC GTTTTAAAAC GGCCGGCCAG ATCAAAGAAA CACTGAAGCG TGTTAAAGAA 
GGCAAAACAA ATATTCTCAT CGGTACACAA CGTGTTATCA GCAAAGATGT TGAATTTCAG 
AATGTAGGTT TACTGATTAT AGATGAGGAA CAAAAGTTTG GTGTGAAGGT TAAGGAAAAA 
CTGCGTGAAT TTAAAATCAA TATTGATACC TTAACACTTA CCGCTACACC AATACCGCGT 
ACGCTGCATT TCTCTTTAAT GGGTGCGCGC GATTTATCCA TCATAGCTAC GCCGCCCCCA 
AACAGACAAC CCGTTACTAC TGAAATACAT GTTTTTGATG AAGCATTCAT ACGCGATGCC 
ATTTCATTTG AATTGAAACG CGGTGGACAG GTATTTTTTG TTCACAACCG GGTGAAAGAT 
ATTGATGGCA TGGCATTCCT GATTAAAAAG CTGGTGCCCG ATGCGCGTGT TACGTTTGCA 
CACGGACAGA TGGAAGGAGA CAAGCTTGAA GAAGTAATGC TGAAATTTGT TGAAGGCGAA 
TACGATGTAT TGGTTTCAAC AAACATTATT GAATCTGGCC TCGACATACC AAATGCCAAT 
ACAATTATTA TCAATAGTGC GCATATGTTT GGTCTTTCCG ATCTGCATCA GATGCGCGGA 
CGTGTAGGCA GAAGCAATAA AAAAGCATTC TGTTATCTGC TTACTCCTTC AGTATCTGCA 
TTAACAGGTG ATTCCAGAAA ACGATTAAGC GTACTGGAAG AATTTTCTGA TCTTGGGGAT 
GGCTTTAAAG TAGCCATGCG TGATCTGGAT ATCCGCGGTG CCGGTAACAT GTTGGGTGCG 
GAGCAAAGCG GTTTTATTAC AGATCTTGGT TTTGATATGT ATCATAAAAT TCTGGATGAA 
GCTATTCAGG AATTAAAGGA AACAGAGTTC GCTGATTTAT TCAGAGACGA ACTGGACCAG 
CAGCGTTTAA AAAATCTTGT GCAGGATTGT GTTATTGAAA CAGATTTATC TATTCTGATT 
CCGGATACAT ATGTAACTAA TATTTCAGAA CGTCTTTCGC TCTATTCAAC AATTGATAAC 
ATTAAAAATG AAACGGAGTT AACATCTTTT ATACAAGGGT TAACAGACCG CTTCGGACCA 
TTACCAAAAG AAGTGATTGA TCTTACAGAA ACCATTAAGC TGCGGTGGTT AGCACAAGAA 
CTTGGTTTTG AGAAGTTAAC CATTAAGAAT GACGTCATGC GCTGTCAATT CGTGCCTTCA 
GAACGTACCA GTTATTATAC CTCTGATGTA TTTGGTTCTA TATTAACATT TGTTCAGACT 
CATTCAAAAA AGTGTAAAAT GAAAGAAGTA AACAAAAAAC TTCTTTTAAC TATATCAGAT 
ATTAAATCTG TTGAAATGGC TCTTTCAATA TTCAATGAAA TTCAAAAACC TTTATCCGTA 
GCAAAGTAA 

 

Protein sequence

MKVTELLNIY EKDSHIQLLK QKLQERENNA LFLKGLSGSM DALIAAALSK SDKKSHVFIL 
ADKDEAYFFQ NDLQQLLGLP VFVFPASYKK PYHYEQVENA NILQRAETLN YIINNQDKPS 
YLVTYPLALS EKVINKRSLV ENTFIARIGE KLNREFMEEF LQSYGFERTD FVYEAGQYAI 
RGGIIDIFSY ANELPFRIEL FGTEIESIRT FNPESQLSVD NIPVLSITPN VQTRLLKEER 
ESLFTFLPAD TTLWIKDYAL TTEIIEECFS KVESQFDTIL SSTGNSALLT SPDALFEDKY 
SFEKSIEAYS IIEFGPHSYI PNATRIEFEA KPQPSFNKEF NLLLEDFRLR INQGYKIIIA 
SESHQQIQRL HSILEELDPY IRFEEMIIPL REGFIDLQRN ILCYTDHQIF DRFHRYKTKE 
RFSKSKSITL KELRTLQPGD FVAHADFGIA RFAGLERIEN NGHTQEAIRL VFRDDDLMVI 
SIHALHKISR YSGKDGQPPV MSKLGSGDWE NKKSKVKRQV KDIAKELIQL YAKRKAAPGF 
AYTPDSFLQV ELESSFMYED TPDQSKATAD VKKDMESPHP MDRLVCGDVG FGKTEIAVRA 
AFKAVCDGKQ VAVLVPTTIL AMQHYKTFRD RLSRFPCVVE YINRFKTAGQ IKETLKRVKE 
GKTNILIGTQ RVISKDVEFQ NVGLLIIDEE QKFGVKVKEK LREFKINIDT LTLTATPIPR 
TLHFSLMGAR DLSIIATPPP NRQPVTTEIH VFDEAFIRDA ISFELKRGGQ VFFVHNRVKD 
IDGMAFLIKK LVPDARVTFA HGQMEGDKLE EVMLKFVEGE YDVLVSTNII ESGLDIPNAN 
TIIINSAHMF GLSDLHQMRG RVGRSNKKAF CYLLTPSVSA LTGDSRKRLS VLEEFSDLGD 
GFKVAMRDLD IRGAGNMLGA EQSGFITDLG FDMYHKILDE AIQELKETEF ADLFRDELDQ 
QRLKNLVQDC VIETDLSILI PDTYVTNISE RLSLYSTIDN IKNETELTSF IQGLTDRFGP 
LPKEVIDLTE TIKLRWLAQE LGFEKLTIKN DVMRCQFVPS ERTSYYTSDV FGSILTFVQT 
HSKKCKMKEV NKKLLLTISD IKSVEMALSI FNEIQKPLSV AK