Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3448 |
Symbol | |
ID | 4185380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 3963018 |
End bp | 3968537 |
Gene Length | 5520 bp |
Protein Length | 1839 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638073436 |
Product | hypothetical protein |
Protein accession | YP_680025 |
Protein GI | 110639815 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0227257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGATTC AGCCATCCGT TTCTTTTCCT TCTACCTTTT TGAGCGACTA TGCAGACCCT GCAAACACAA GCATCCGTGT TTATCTGGCT GATATGACGA AACAAAATTA TACGATCAAT ATTCGTATTC AATTAACAAG TACCAATATT TCATACACCA GTCTTTATGG TATTAATGTA ACGCTTGACG GCGGACAGGT ATATTTTTTA AATGCAAATG AACTGGCACG TCTATTCGCA CTCACTGATT TAAAAGTTGT TGCTTCTTCA CAGGGTAATG AACCCAACTC ACTGCCGGAA GGCTCATATA ACCTGGCACT GCAGGCATTT GATGTAACGC TTTTACCGAC ACTCGTACCT GTATCAAACA TCCGTACAGA TTTCACTATT TTCAATGTCG TGCGTTATGA CCCGCCCCTG TTAAATGCAC CAATGAATAA GCAGGAATTT GATCTGCAGA CGACCAACCA GAATATTTTC TTTAACTGGA CTCCGCGGCA CATTGTTTAT TCGCCAAACC AGCGGATACA ATACCGTTAC CGCATGATAC GCGTTATTCC GGTAGATCGT AATCCGTATG ATGCCGTAAA TACGAGCCTT GCCGGAGCAA CAGGAAATAT TGATGTAAAC AATTTAGACT TTCCTGCATT CAGTTATTCT CCCGCTGATC TTAAGCTGGA ACCAGGTGCC GTATATGCCT GGCAAGTGCA GGCATATGAA ACAGTAAACG GGCAGAAATC AACCAGCAGA TTTAAAAACC AGGGATACTC AGAAGTATTT ACGTTTTCTG TTAAAGAACA CTGCGAGCAG ATAACCCTTG GAACACCTCT TGTTATGGGG AATTCTGTAA AATTTAACTG GAACAGCGGA ATCTCTTCAG AATATAAGGA ATACGAATTC AATTACCGTA AGGTAGGTTC AAACACAGGC TGGATTCCGG TCAGTACACT TGAAAATACC ATTACGCTTG ATAACACCGT ACTTGAAACA GGTGTTTCGT ATGAATACAA TGTAAGAGCC CGGTGCAACA ATTGGCTGCT GCCGGTACAA GGTGAAAACT TTACGTTAGC AACACCAACC TGTGTACCGC CTTCTCCGCT TACAGTCAAT ACAAGCGGCA ATGCAACCGT ATTGAGCTGG CCGCAGGCAA AAAGTGTTGA CAGCTTAAAA CTATATTATA AAATAACAGG CAGCAGTGAT CCGTATAAAA CACTTGGACT AAACGCTGCG GATGTGCAGT GCAGCCTTCC GCTGCTTACA TCAGGCGGCT ACACCATACA CCTGGATGCA CTTTGTGGTA CCGAACAGTC GGCAGGTGCA GAAAATTCCT TTGCTTTTGA TGAGACCGGT ATTGTAGGAC CGTGCCCGAT ACCCCTGCCG TTTCAATTGA CTGCAAACCG GATTAAAGGA GATACTGCAA GCCTGCAATG GAACACCGTT GCCGGTGCAC ATACAGGATC AGGTATCACA TACTGGCACA AAGATTCAAG CACCGTTACC TATACCCTGA GTGCAATAAC AACAAGCGCA GGTACAGGGG TGTCCGGCCG ACATATTTAC AACGATCAGG TATATAGCTA CCAGATTACC TATCAATGCG GAAATAAAAC AAAGGTAACA CCAGTAGGTA TGTTCCGGAT TCTTTCTGCA TCAGCACAAG TAGCCATCGA TCCGCAAACA GCGAATTGTT TTCCTCCGGT AGACATCCGT GCAGAAGCAC GCGACTCCGT ATCTGCCCGC GTAGAATGGG ATAAAATTTC CGGTGCCGAA AGCTATGAAC TGAGCTATCG GGTAAAAGGA ACAACCGGTC TTTTTACAAC GTTCAATACA ACAGCAATCA GTACAACACT GAAACCATTG CAGGCCAATG CACAATATCA ATTGCTGGTA CGTGTTAAAT GCAACGGACT GTTCAGTATC TATTCAGATA CAGCGTTACT TGATCTAACC GTTGCGCGTA ACAGGAATTG CGATACAATA GCCTATTTTA AAACGCTTAA CAAAACCACC GGCAATATTC AGGTTGCCTG GGATTATGAT TCAACCAACA CGGGTTACAT CATTAAATAC AGAGAAGAGG CACAACCGAT TGCAACGGAG TATACACAGG CATTTACAAA TATTGACAGC TTAAAGCAAA ACAATTTAGT GCTGCCGGAT ACATTTAAAT ATACGTTTCA GAATTTAAAA GCCGGCACAA AATACATTTT CCGTATTCAG AAAATATGCG GACAAAATAA TGCACTCTTT AATGCGCCGT TAGTTGTTTC CACCATGCCC GATACAAAAA GTACGGGAGC CTGCGGAAGC GGAAATGTGT GTGATAAAAA TCCGGCAACA AAATTACAAT CCTTAAAGGT AACGGATACC ATTTATTGCG CGGATTACCT TGTTGTGGTA GATAGTATAA CTACTGCTAC ATCAAATCCA TCGATGGGTC TTTATTCCGG TCTGGGCCAT ATGGAAATGC CCGTGCCTGG TCTGGGTGAT TTTGTAAACA TGCATGTGAG TTTTAATAAT GTAAAAATAA ACGGCAAACC CAACAGCTGT GTATATGATG GAACGATCAA TATAGACAGT ATGAATGCCA GCATCATACC AATAAAAATA AGGGATTCTA TCAAGGCAAT TATGGCGAAA GCCGAAGAAG TAATTGACCA GGCAAACGAA GTGTTAAATC AGATACAAAC AGGTATAGAT GATGCGCAGG CAGCCACACA GGATGGCATC GATTATTTTC AGGGTGGTGA AGGTGTAGGA AATGTTAAGA CCGGAGGCTT GGGTGAAACG GAAGCAGGTG CTAAAATTTC CAAAACTACC CGGACAGCCA CAGTAGGTAC AAATTCTGTT ACGATTGATG GGCGCACCGT TCCGGTCACG TCAGTCCCGG TATTGATAAA GGATAGCGAT GGCCAGGTAT TCCAGGTGTC GCCTGCCGGG GTTGTAACTT ATCTGGGGGT ATATAATACA GCGTTCGCAA AAGATACAAC CTTAGATCTC TCTGCACAGA TTGTTACCTA TGAAGAGGCT GCAGGGGCTG TGTATGATTT TGATAAACGT GAAACGGCAT ATAGTGTGTC CACACAGATT GACCGGGAAT ACGAAAAAAT CGGCACGAGT TATTATGTGC CGGCTAAGTT TATAACACCG GGCGCGCTGG ATAAAGTAAC GGCAACGGTA AGCGGAAGCA GCGCAGATCC GGCAAAAGTT GTATTTACAA ACGGAAAAGG GTTTGTATAT GAAAAAGGAA CGGCAACCGG CAATAGCTTT ACGCTAAACG TAGCGGGTGG TCCGGCCTCA GACGGGCAGT ACATCTATGC CTGGTATGTA GATGGAGATA GCAAAAAAGC CATCGGTAAA TTGTTGTTGC CAAGTTATGC ACCGCAGGTT AAAAATGTTG TCATTGTTCC CGTAAAAGGA AATCAAACGT TTAATCCTGC AACGTATGAA ACGTATCTGA ATCAAACCTA TCAAAAGGTA GGTATTACCT ATCATGTAAC ACTGGATAAC ACCTTCCGCA CAAATACAGC CTGGTCAACC GACGGCAATT TAACCGTACA ATCAAGTGCA AGCGGTCTGC TAAGCAACGA TTATCAGGGA AAAGAAAAAG CTATTGTTCA GGCGTATGTA GCATTTAAAG GCGGTGCTGC TAATATAGAT TCCACCGCTG CTTATTTTAT GGCAGTCTAC GAACCCTCTT CAATAAAAGA TGGAACATCT AATTTATTAG GTAAAATGCC GGCAGAGGAG CAATTCGGAT TCTTATATTC AGGCAGCTTC CCTGCTTCAG GCTCAGGACA GGATGAGGGC TTAAAACGTA CGATGGCGCA TGAACTCGGG CATGGAGCTT ATCACATGGA ACATACTTTC AATGCCATTT ATTTGCGTGA AACCAGCAGA AATAATACAA CTAACTTAAT GGACTATGCC GCAGGTAATC AACTCTGGAA ATTCCAGTGG GACATTATAC ACGCACCAGG CCATGTGTGG GGGATTCTGA AGAGAGATCG GGATGCGCAA CTGGTGAGAG ATCCATTTTT CTTTAATCCC GGTGGAATTC CATTTAAAAT TAAAACAGAT CTTTGGGGAG GAAATTATAA GTTAAATGTT CCAATTAGTA TGATTGAAAA TGGAACATTT CCCAATGGTG TTGTATATGG TTGGTATGTT TTAAAAAATG ATGTAAAAGT TGATGAGTTT AGAGCAAAAA TTCAGAATGG TAAATTTTTA GGATATTATC AGGTAGTAGA TGATGTAGTA ACAAATAATT ATTACGATGA TGGTGTGTCA TTGCAAATTG ATTATAGTTT TGAGCTTAAT GACCTTGGTA GCACTCTTTA TCTTGCTAAT TATATTGGTA GATGCAATGT GGCTCTTTAT AAAACTGAAT ATACAATAAG AGGAACAAGA AAGACTGAAA GTGAGTATAA AAACGGTTCT GTTAAAGTAA TAGCTCAGAT AAATAATTAT TTACCCATAA GCCTAAGCGA AGTTATAAAT TATCAAACGC CTTGTTCTTT TACAAACGGA AAATTTGCTG CAGGTGAATA TGCCACATAT GATGATTATA AAAAGGTACT TGGTGCAAAT GCTCAGCCTA TTGGATCAGA TACTTGGTCA GGCGCTTGGC TAAAATCTGA TAGAATAAAT CGAACACAGA GATGGATTAA TGCAATGGAA TATATTACAT TACAAAAATG GCATAATGTT TTAAGACCAT ATCACCAAGT TAGTGATTAT TATCTTTGGG CTCAATGGAA AGCTGAAAAG TTAGGTCATG AAATAAGATG GGCGAAAGGT GCTGCATATT TAGTAGATGA TTTAGGAGAT GGATATGAAT CCGGTGCGAC AAGTGCAAAT ATTACAGATA TGGGCGAAAG AATGGGCCAA TCAATTTTGT CAGATTTGAA TATGGGTATT TTAAACTATG CGATGGATAG GTTTAATGAT TTGTTTTATG GGCCAAATAG ACATGTTATA CTAAAGGGTA ATGCTGCGTA TTTATGGGAT TTAAGTTTTA TTAAAGAAGA ACAAGGTGAT GTTGCATATG GTGTGTATCC AAATTATAAG AATTCTGAAG AGTTGACAAC ATTAAAAAAT ATAACTCGAA AAGAAGGTAT GTATGGAACT GGCTCTGTTT TTATTGCAAG ATTTATTCCA AATTTTGCAG TAATTGAAGC AGATGTTAGT GATGCTAATA CAAGATATGG AGAAGTTGCA AGAATAAATA TTCCAATGTT TATGCTTTGG CCAAATACAC ATGATATGAA TGCATATCAG CAATTTACTA ACCCTTATAA TTTATCTAAT CACAGAACTC CTTACAATAA ATATCTTATA TCTGGAGGTA AGCTTAATGT AAATTATGTT ACAAGTGATT GTGTAACAAC AGCTGTATAT ACATCTCCTG GAACTCCTGC AGTACTTGTA AAAATCTGTA ATGATAAATT TGTTGAAGAA GTATTATATG CAAATTCTCA AGTAAATAGA TTTTATGAAA GCAATAAAAT CCAGCAATAA
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Protein sequence | MQIQPSVSFP STFLSDYADP ANTSIRVYLA DMTKQNYTIN IRIQLTSTNI SYTSLYGINV TLDGGQVYFL NANELARLFA LTDLKVVASS QGNEPNSLPE GSYNLALQAF DVTLLPTLVP VSNIRTDFTI FNVVRYDPPL LNAPMNKQEF DLQTTNQNIF FNWTPRHIVY SPNQRIQYRY RMIRVIPVDR NPYDAVNTSL AGATGNIDVN NLDFPAFSYS PADLKLEPGA VYAWQVQAYE TVNGQKSTSR FKNQGYSEVF TFSVKEHCEQ ITLGTPLVMG NSVKFNWNSG ISSEYKEYEF NYRKVGSNTG WIPVSTLENT ITLDNTVLET GVSYEYNVRA RCNNWLLPVQ GENFTLATPT CVPPSPLTVN TSGNATVLSW PQAKSVDSLK LYYKITGSSD PYKTLGLNAA DVQCSLPLLT SGGYTIHLDA LCGTEQSAGA ENSFAFDETG IVGPCPIPLP FQLTANRIKG DTASLQWNTV AGAHTGSGIT YWHKDSSTVT YTLSAITTSA GTGVSGRHIY NDQVYSYQIT YQCGNKTKVT PVGMFRILSA SAQVAIDPQT ANCFPPVDIR AEARDSVSAR VEWDKISGAE SYELSYRVKG TTGLFTTFNT TAISTTLKPL QANAQYQLLV RVKCNGLFSI YSDTALLDLT VARNRNCDTI AYFKTLNKTT GNIQVAWDYD STNTGYIIKY REEAQPIATE YTQAFTNIDS LKQNNLVLPD TFKYTFQNLK AGTKYIFRIQ KICGQNNALF NAPLVVSTMP DTKSTGACGS GNVCDKNPAT KLQSLKVTDT IYCADYLVVV DSITTATSNP SMGLYSGLGH MEMPVPGLGD FVNMHVSFNN VKINGKPNSC VYDGTINIDS MNASIIPIKI RDSIKAIMAK AEEVIDQANE VLNQIQTGID DAQAATQDGI DYFQGGEGVG NVKTGGLGET EAGAKISKTT RTATVGTNSV TIDGRTVPVT SVPVLIKDSD GQVFQVSPAG VVTYLGVYNT AFAKDTTLDL SAQIVTYEEA AGAVYDFDKR ETAYSVSTQI DREYEKIGTS YYVPAKFITP GALDKVTATV SGSSADPAKV VFTNGKGFVY EKGTATGNSF TLNVAGGPAS DGQYIYAWYV DGDSKKAIGK LLLPSYAPQV KNVVIVPVKG NQTFNPATYE TYLNQTYQKV GITYHVTLDN TFRTNTAWST DGNLTVQSSA SGLLSNDYQG KEKAIVQAYV AFKGGAANID STAAYFMAVY EPSSIKDGTS NLLGKMPAEE QFGFLYSGSF PASGSGQDEG LKRTMAHELG HGAYHMEHTF NAIYLRETSR NNTTNLMDYA AGNQLWKFQW DIIHAPGHVW GILKRDRDAQ LVRDPFFFNP GGIPFKIKTD LWGGNYKLNV PISMIENGTF PNGVVYGWYV LKNDVKVDEF RAKIQNGKFL GYYQVVDDVV TNNYYDDGVS LQIDYSFELN DLGSTLYLAN YIGRCNVALY KTEYTIRGTR KTESEYKNGS VKVIAQINNY LPISLSEVIN YQTPCSFTNG KFAAGEYATY DDYKKVLGAN AQPIGSDTWS GAWLKSDRIN RTQRWINAME YITLQKWHNV LRPYHQVSDY YLWAQWKAEK LGHEIRWAKG AAYLVDDLGD GYESGATSAN ITDMGERMGQ SILSDLNMGI LNYAMDRFND LFYGPNRHVI LKGNAAYLWD LSFIKEEQGD VAYGVYPNYK NSEELTTLKN ITRKEGMYGT GSVFIARFIP NFAVIEADVS DANTRYGEVA RINIPMFMLW PNTHDMNAYQ QFTNPYNLSN HRTPYNKYLI SGGKLNVNYV TSDCVTTAVY TSPGTPAVLV KICNDKFVEE VLYANSQVNR FYESNKIQQ
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