Gene CHU_3448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3448 
Symbol 
ID4185380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3963018 
End bp3968537 
Gene Length5520 bp 
Protein Length1839 aa 
Translation table11 
GC content40% 
IMG OID638073436 
Producthypothetical protein 
Protein accessionYP_680025 
Protein GI110639815 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0227257 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGATTC AGCCATCCGT TTCTTTTCCT TCTACCTTTT TGAGCGACTA TGCAGACCCT 
GCAAACACAA GCATCCGTGT TTATCTGGCT GATATGACGA AACAAAATTA TACGATCAAT
ATTCGTATTC AATTAACAAG TACCAATATT TCATACACCA GTCTTTATGG TATTAATGTA
ACGCTTGACG GCGGACAGGT ATATTTTTTA AATGCAAATG AACTGGCACG TCTATTCGCA
CTCACTGATT TAAAAGTTGT TGCTTCTTCA CAGGGTAATG AACCCAACTC ACTGCCGGAA
GGCTCATATA ACCTGGCACT GCAGGCATTT GATGTAACGC TTTTACCGAC ACTCGTACCT
GTATCAAACA TCCGTACAGA TTTCACTATT TTCAATGTCG TGCGTTATGA CCCGCCCCTG
TTAAATGCAC CAATGAATAA GCAGGAATTT GATCTGCAGA CGACCAACCA GAATATTTTC
TTTAACTGGA CTCCGCGGCA CATTGTTTAT TCGCCAAACC AGCGGATACA ATACCGTTAC
CGCATGATAC GCGTTATTCC GGTAGATCGT AATCCGTATG ATGCCGTAAA TACGAGCCTT
GCCGGAGCAA CAGGAAATAT TGATGTAAAC AATTTAGACT TTCCTGCATT CAGTTATTCT
CCCGCTGATC TTAAGCTGGA ACCAGGTGCC GTATATGCCT GGCAAGTGCA GGCATATGAA
ACAGTAAACG GGCAGAAATC AACCAGCAGA TTTAAAAACC AGGGATACTC AGAAGTATTT
ACGTTTTCTG TTAAAGAACA CTGCGAGCAG ATAACCCTTG GAACACCTCT TGTTATGGGG
AATTCTGTAA AATTTAACTG GAACAGCGGA ATCTCTTCAG AATATAAGGA ATACGAATTC
AATTACCGTA AGGTAGGTTC AAACACAGGC TGGATTCCGG TCAGTACACT TGAAAATACC
ATTACGCTTG ATAACACCGT ACTTGAAACA GGTGTTTCGT ATGAATACAA TGTAAGAGCC
CGGTGCAACA ATTGGCTGCT GCCGGTACAA GGTGAAAACT TTACGTTAGC AACACCAACC
TGTGTACCGC CTTCTCCGCT TACAGTCAAT ACAAGCGGCA ATGCAACCGT ATTGAGCTGG
CCGCAGGCAA AAAGTGTTGA CAGCTTAAAA CTATATTATA AAATAACAGG CAGCAGTGAT
CCGTATAAAA CACTTGGACT AAACGCTGCG GATGTGCAGT GCAGCCTTCC GCTGCTTACA
TCAGGCGGCT ACACCATACA CCTGGATGCA CTTTGTGGTA CCGAACAGTC GGCAGGTGCA
GAAAATTCCT TTGCTTTTGA TGAGACCGGT ATTGTAGGAC CGTGCCCGAT ACCCCTGCCG
TTTCAATTGA CTGCAAACCG GATTAAAGGA GATACTGCAA GCCTGCAATG GAACACCGTT
GCCGGTGCAC ATACAGGATC AGGTATCACA TACTGGCACA AAGATTCAAG CACCGTTACC
TATACCCTGA GTGCAATAAC AACAAGCGCA GGTACAGGGG TGTCCGGCCG ACATATTTAC
AACGATCAGG TATATAGCTA CCAGATTACC TATCAATGCG GAAATAAAAC AAAGGTAACA
CCAGTAGGTA TGTTCCGGAT TCTTTCTGCA TCAGCACAAG TAGCCATCGA TCCGCAAACA
GCGAATTGTT TTCCTCCGGT AGACATCCGT GCAGAAGCAC GCGACTCCGT ATCTGCCCGC
GTAGAATGGG ATAAAATTTC CGGTGCCGAA AGCTATGAAC TGAGCTATCG GGTAAAAGGA
ACAACCGGTC TTTTTACAAC GTTCAATACA ACAGCAATCA GTACAACACT GAAACCATTG
CAGGCCAATG CACAATATCA ATTGCTGGTA CGTGTTAAAT GCAACGGACT GTTCAGTATC
TATTCAGATA CAGCGTTACT TGATCTAACC GTTGCGCGTA ACAGGAATTG CGATACAATA
GCCTATTTTA AAACGCTTAA CAAAACCACC GGCAATATTC AGGTTGCCTG GGATTATGAT
TCAACCAACA CGGGTTACAT CATTAAATAC AGAGAAGAGG CACAACCGAT TGCAACGGAG
TATACACAGG CATTTACAAA TATTGACAGC TTAAAGCAAA ACAATTTAGT GCTGCCGGAT
ACATTTAAAT ATACGTTTCA GAATTTAAAA GCCGGCACAA AATACATTTT CCGTATTCAG
AAAATATGCG GACAAAATAA TGCACTCTTT AATGCGCCGT TAGTTGTTTC CACCATGCCC
GATACAAAAA GTACGGGAGC CTGCGGAAGC GGAAATGTGT GTGATAAAAA TCCGGCAACA
AAATTACAAT CCTTAAAGGT AACGGATACC ATTTATTGCG CGGATTACCT TGTTGTGGTA
GATAGTATAA CTACTGCTAC ATCAAATCCA TCGATGGGTC TTTATTCCGG TCTGGGCCAT
ATGGAAATGC CCGTGCCTGG TCTGGGTGAT TTTGTAAACA TGCATGTGAG TTTTAATAAT
GTAAAAATAA ACGGCAAACC CAACAGCTGT GTATATGATG GAACGATCAA TATAGACAGT
ATGAATGCCA GCATCATACC AATAAAAATA AGGGATTCTA TCAAGGCAAT TATGGCGAAA
GCCGAAGAAG TAATTGACCA GGCAAACGAA GTGTTAAATC AGATACAAAC AGGTATAGAT
GATGCGCAGG CAGCCACACA GGATGGCATC GATTATTTTC AGGGTGGTGA AGGTGTAGGA
AATGTTAAGA CCGGAGGCTT GGGTGAAACG GAAGCAGGTG CTAAAATTTC CAAAACTACC
CGGACAGCCA CAGTAGGTAC AAATTCTGTT ACGATTGATG GGCGCACCGT TCCGGTCACG
TCAGTCCCGG TATTGATAAA GGATAGCGAT GGCCAGGTAT TCCAGGTGTC GCCTGCCGGG
GTTGTAACTT ATCTGGGGGT ATATAATACA GCGTTCGCAA AAGATACAAC CTTAGATCTC
TCTGCACAGA TTGTTACCTA TGAAGAGGCT GCAGGGGCTG TGTATGATTT TGATAAACGT
GAAACGGCAT ATAGTGTGTC CACACAGATT GACCGGGAAT ACGAAAAAAT CGGCACGAGT
TATTATGTGC CGGCTAAGTT TATAACACCG GGCGCGCTGG ATAAAGTAAC GGCAACGGTA
AGCGGAAGCA GCGCAGATCC GGCAAAAGTT GTATTTACAA ACGGAAAAGG GTTTGTATAT
GAAAAAGGAA CGGCAACCGG CAATAGCTTT ACGCTAAACG TAGCGGGTGG TCCGGCCTCA
GACGGGCAGT ACATCTATGC CTGGTATGTA GATGGAGATA GCAAAAAAGC CATCGGTAAA
TTGTTGTTGC CAAGTTATGC ACCGCAGGTT AAAAATGTTG TCATTGTTCC CGTAAAAGGA
AATCAAACGT TTAATCCTGC AACGTATGAA ACGTATCTGA ATCAAACCTA TCAAAAGGTA
GGTATTACCT ATCATGTAAC ACTGGATAAC ACCTTCCGCA CAAATACAGC CTGGTCAACC
GACGGCAATT TAACCGTACA ATCAAGTGCA AGCGGTCTGC TAAGCAACGA TTATCAGGGA
AAAGAAAAAG CTATTGTTCA GGCGTATGTA GCATTTAAAG GCGGTGCTGC TAATATAGAT
TCCACCGCTG CTTATTTTAT GGCAGTCTAC GAACCCTCTT CAATAAAAGA TGGAACATCT
AATTTATTAG GTAAAATGCC GGCAGAGGAG CAATTCGGAT TCTTATATTC AGGCAGCTTC
CCTGCTTCAG GCTCAGGACA GGATGAGGGC TTAAAACGTA CGATGGCGCA TGAACTCGGG
CATGGAGCTT ATCACATGGA ACATACTTTC AATGCCATTT ATTTGCGTGA AACCAGCAGA
AATAATACAA CTAACTTAAT GGACTATGCC GCAGGTAATC AACTCTGGAA ATTCCAGTGG
GACATTATAC ACGCACCAGG CCATGTGTGG GGGATTCTGA AGAGAGATCG GGATGCGCAA
CTGGTGAGAG ATCCATTTTT CTTTAATCCC GGTGGAATTC CATTTAAAAT TAAAACAGAT
CTTTGGGGAG GAAATTATAA GTTAAATGTT CCAATTAGTA TGATTGAAAA TGGAACATTT
CCCAATGGTG TTGTATATGG TTGGTATGTT TTAAAAAATG ATGTAAAAGT TGATGAGTTT
AGAGCAAAAA TTCAGAATGG TAAATTTTTA GGATATTATC AGGTAGTAGA TGATGTAGTA
ACAAATAATT ATTACGATGA TGGTGTGTCA TTGCAAATTG ATTATAGTTT TGAGCTTAAT
GACCTTGGTA GCACTCTTTA TCTTGCTAAT TATATTGGTA GATGCAATGT GGCTCTTTAT
AAAACTGAAT ATACAATAAG AGGAACAAGA AAGACTGAAA GTGAGTATAA AAACGGTTCT
GTTAAAGTAA TAGCTCAGAT AAATAATTAT TTACCCATAA GCCTAAGCGA AGTTATAAAT
TATCAAACGC CTTGTTCTTT TACAAACGGA AAATTTGCTG CAGGTGAATA TGCCACATAT
GATGATTATA AAAAGGTACT TGGTGCAAAT GCTCAGCCTA TTGGATCAGA TACTTGGTCA
GGCGCTTGGC TAAAATCTGA TAGAATAAAT CGAACACAGA GATGGATTAA TGCAATGGAA
TATATTACAT TACAAAAATG GCATAATGTT TTAAGACCAT ATCACCAAGT TAGTGATTAT
TATCTTTGGG CTCAATGGAA AGCTGAAAAG TTAGGTCATG AAATAAGATG GGCGAAAGGT
GCTGCATATT TAGTAGATGA TTTAGGAGAT GGATATGAAT CCGGTGCGAC AAGTGCAAAT
ATTACAGATA TGGGCGAAAG AATGGGCCAA TCAATTTTGT CAGATTTGAA TATGGGTATT
TTAAACTATG CGATGGATAG GTTTAATGAT TTGTTTTATG GGCCAAATAG ACATGTTATA
CTAAAGGGTA ATGCTGCGTA TTTATGGGAT TTAAGTTTTA TTAAAGAAGA ACAAGGTGAT
GTTGCATATG GTGTGTATCC AAATTATAAG AATTCTGAAG AGTTGACAAC ATTAAAAAAT
ATAACTCGAA AAGAAGGTAT GTATGGAACT GGCTCTGTTT TTATTGCAAG ATTTATTCCA
AATTTTGCAG TAATTGAAGC AGATGTTAGT GATGCTAATA CAAGATATGG AGAAGTTGCA
AGAATAAATA TTCCAATGTT TATGCTTTGG CCAAATACAC ATGATATGAA TGCATATCAG
CAATTTACTA ACCCTTATAA TTTATCTAAT CACAGAACTC CTTACAATAA ATATCTTATA
TCTGGAGGTA AGCTTAATGT AAATTATGTT ACAAGTGATT GTGTAACAAC AGCTGTATAT
ACATCTCCTG GAACTCCTGC AGTACTTGTA AAAATCTGTA ATGATAAATT TGTTGAAGAA
GTATTATATG CAAATTCTCA AGTAAATAGA TTTTATGAAA GCAATAAAAT CCAGCAATAA
 
Protein sequence
MQIQPSVSFP STFLSDYADP ANTSIRVYLA DMTKQNYTIN IRIQLTSTNI SYTSLYGINV 
TLDGGQVYFL NANELARLFA LTDLKVVASS QGNEPNSLPE GSYNLALQAF DVTLLPTLVP
VSNIRTDFTI FNVVRYDPPL LNAPMNKQEF DLQTTNQNIF FNWTPRHIVY SPNQRIQYRY
RMIRVIPVDR NPYDAVNTSL AGATGNIDVN NLDFPAFSYS PADLKLEPGA VYAWQVQAYE
TVNGQKSTSR FKNQGYSEVF TFSVKEHCEQ ITLGTPLVMG NSVKFNWNSG ISSEYKEYEF
NYRKVGSNTG WIPVSTLENT ITLDNTVLET GVSYEYNVRA RCNNWLLPVQ GENFTLATPT
CVPPSPLTVN TSGNATVLSW PQAKSVDSLK LYYKITGSSD PYKTLGLNAA DVQCSLPLLT
SGGYTIHLDA LCGTEQSAGA ENSFAFDETG IVGPCPIPLP FQLTANRIKG DTASLQWNTV
AGAHTGSGIT YWHKDSSTVT YTLSAITTSA GTGVSGRHIY NDQVYSYQIT YQCGNKTKVT
PVGMFRILSA SAQVAIDPQT ANCFPPVDIR AEARDSVSAR VEWDKISGAE SYELSYRVKG
TTGLFTTFNT TAISTTLKPL QANAQYQLLV RVKCNGLFSI YSDTALLDLT VARNRNCDTI
AYFKTLNKTT GNIQVAWDYD STNTGYIIKY REEAQPIATE YTQAFTNIDS LKQNNLVLPD
TFKYTFQNLK AGTKYIFRIQ KICGQNNALF NAPLVVSTMP DTKSTGACGS GNVCDKNPAT
KLQSLKVTDT IYCADYLVVV DSITTATSNP SMGLYSGLGH MEMPVPGLGD FVNMHVSFNN
VKINGKPNSC VYDGTINIDS MNASIIPIKI RDSIKAIMAK AEEVIDQANE VLNQIQTGID
DAQAATQDGI DYFQGGEGVG NVKTGGLGET EAGAKISKTT RTATVGTNSV TIDGRTVPVT
SVPVLIKDSD GQVFQVSPAG VVTYLGVYNT AFAKDTTLDL SAQIVTYEEA AGAVYDFDKR
ETAYSVSTQI DREYEKIGTS YYVPAKFITP GALDKVTATV SGSSADPAKV VFTNGKGFVY
EKGTATGNSF TLNVAGGPAS DGQYIYAWYV DGDSKKAIGK LLLPSYAPQV KNVVIVPVKG
NQTFNPATYE TYLNQTYQKV GITYHVTLDN TFRTNTAWST DGNLTVQSSA SGLLSNDYQG
KEKAIVQAYV AFKGGAANID STAAYFMAVY EPSSIKDGTS NLLGKMPAEE QFGFLYSGSF
PASGSGQDEG LKRTMAHELG HGAYHMEHTF NAIYLRETSR NNTTNLMDYA AGNQLWKFQW
DIIHAPGHVW GILKRDRDAQ LVRDPFFFNP GGIPFKIKTD LWGGNYKLNV PISMIENGTF
PNGVVYGWYV LKNDVKVDEF RAKIQNGKFL GYYQVVDDVV TNNYYDDGVS LQIDYSFELN
DLGSTLYLAN YIGRCNVALY KTEYTIRGTR KTESEYKNGS VKVIAQINNY LPISLSEVIN
YQTPCSFTNG KFAAGEYATY DDYKKVLGAN AQPIGSDTWS GAWLKSDRIN RTQRWINAME
YITLQKWHNV LRPYHQVSDY YLWAQWKAEK LGHEIRWAKG AAYLVDDLGD GYESGATSAN
ITDMGERMGQ SILSDLNMGI LNYAMDRFND LFYGPNRHVI LKGNAAYLWD LSFIKEEQGD
VAYGVYPNYK NSEELTTLKN ITRKEGMYGT GSVFIARFIP NFAVIEADVS DANTRYGEVA
RINIPMFMLW PNTHDMNAYQ QFTNPYNLSN HRTPYNKYLI SGGKLNVNYV TSDCVTTAVY
TSPGTPAVLV KICNDKFVEE VLYANSQVNR FYESNKIQQ