| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3398 |
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| Symbol | xerC |
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| ID | 4186513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 3878746 |
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| End bp | 3879627 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638073388 |
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| Product | integrase |
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| Protein accession | YP_679977 |
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| Protein GI | 110639767 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.292469 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.438437 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTAAATG AATTTTTAAC ATATTTATCT TTCGAAAAGA GGTATTCCAA ACATACCACG
GTCTCTTACA AAAACGACCT TTCGAATCTC TCTGATTATC TTCTTATTAC ATACGAACTT
TCTACTCCTG AGCATGCTAA TTATCCCATG CTTCGCAGTT GGATTGTTAC ACTTGTGGAT
CAGGAACTTG AACCTAAATC TATAAACAGG AAAATTGCCT GTCTTAGATC TTATTATCAT
TTTTTACAGA AAAAAGAATT CATCACAAAA GACCCTACCT TAAAAATACG CGCACTTAAA
GTTAAAAAAT CATTGCCTGT TTTTGTAGCA GAAGAAAATA TTACTGACCT GTTAGATAAA
TTTGAATTTG CAGATTCGTT TGAAGGCCTG CGTGATAAAC TTGTGCTCGA ATTGTTGTAT
GGCACTGGTA TCCGGCTCTC TGAACTTATT GGTTTAAAAA ATGCAGATGT CAATATGTTT
CAAAAGACAA TTAAAGTATT GGGTAAAGGA AATAAAGAAC GAATCATTCC TATTCACGAT
ACATTTATAA CACTGGCAAA AGCATATACT ATAAAAAAGA AATCCGAATC ATTTAGTAAC
AATACCGAAT TTTTTGTCGT TACTAATAAC GGGGAGCAAG TATATCCAAT GTTCATTTAT
AGATTAGTGC GCATGTATCT GGACCAGGTA ACAACCGTAG ATAAAAGAAG CCCACATGTC
TTGCGTCACA CATTTGCTAC TCACCTTTTA AACAAGGGAG CAGATTTAAA TGCAATCAAA
GATTTGTTAG GCCATACAAG TCTTGCGGCT ACGCAGGTTT ACACGCATAA TAGCATTGAT
AAATTAAAAG CAATATTTGA TCAAGCCCAC CCTAAATCTT AG
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| Protein sequence | MVNEFLTYLS FEKRYSKHTT VSYKNDLSNL SDYLLITYEL STPEHANYPM LRSWIVTLVD
QELEPKSINR KIACLRSYYH FLQKKEFITK DPTLKIRALK VKKSLPVFVA EENITDLLDK
FEFADSFEGL RDKLVLELLY GTGIRLSELI GLKNADVNMF QKTIKVLGKG NKERIIPIHD
TFITLAKAYT IKKKSESFSN NTEFFVVTNN GEQVYPMFIY RLVRMYLDQV TTVDKRSPHV
LRHTFATHLL NKGADLNAIK DLLGHTSLAA TQVYTHNSID KLKAIFDQAH PKS
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