| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3391 |
|---|
| Symbol | rfbB |
|---|
| ID | 4186506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 3872004 |
|---|
| End bp | 3873068 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638073381 |
|---|
| Product | dTDP-glucose 4,6-dehydratase |
|---|
| Protein accession | YP_679970 |
|---|
| Protein GI | 110639760 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
|---|
| TIGRFAM ID | [TIGR01181] dTDP-glucose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.478209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0989265 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTA ATAAAACGAT ATTAATTACG GGTGGCGCCG GATTTATTGG GTCTCACGTA
GTACGCTTGT TTGTTAATTC ATATCCGGAT TATCTAATAG TGAATTTAGA TAAACTTACA
TATGCAGGGA ATCTCGCAAA TTTAACGGAT ATAGAAAAAG CTCCCAATTA TGTTTTTGAA
AAAGGAGATA TTTCTGATGC AAATTACATT CAGACACTTT TTAAAAAATA TAATTTTGAT
GGCGTTATTC ATTTGGCAGC CGAATCGCAT GTTGACCGTT CAATAGTAGC TCCAATGGAA
TTTGTTGTAA CCAATGTTAT TGGTACAGTA AATTTACTGA ATGCAGCAAA AGATGCCTGG
AAAGGTTCAA ACTACGAAGG TAAACTTTTT TATCACGTCT CTACAGATGA GGTGTATGGC
TCGTTACACG ATGATAGTTT CTTTTTAGAA ACAACATCAT ATGATCCGCA ATCTCCTTAT
TCAGCATCAA AGGCATCTTC AGACCATTTT GTACGTGCCT ATAGTAATAC GTATAAGTTG
CCAGTTGTAC TTACAAACTG TTCAAATAAT TACGGGCCAA ATCAATTTCC TGAAAAACTG
CTTCCTTTAT TTATCAATAA TATTCAAAAT AATAAAGCAT TGCCTGTATA TGGCAAAGGT
GAAAATATCA GAGATTGGTT GTTTGTAATT GATCACGCAA GAGCTATTGA TATTGTTTTT
CATAAAGGTA AACGGGGAGA AACATATAAT ATCGGCGGCC ATAATGAATG GACAAATATT
GATCTGATTC GGTTATTATG TAAGCAAATG GATCAAAAAT TGGGTAGAGC TGAAGGTACA
AGTGAAAAAT TGATCTCGTA TGTGACCGAT AGAGCCGGGC ATGATTTCAG GTATGCGATT
GATGCAACGA AAATTAAAGA TGAATTAGGC TGGGTACCGT CGGTAACGTT TGAACAAGGC
TTGAGCTTAA CGATTGATTG GTATTTAGCA AACAAAAAGT GGATGGAAGA AATTACTTCC
GGTGCGTACG AATCTTATTA CGAAGCACAA TACATTAAAA GATAA
|
|---|
| Protein sequence | MNTNKTILIT GGAGFIGSHV VRLFVNSYPD YLIVNLDKLT YAGNLANLTD IEKAPNYVFE
KGDISDANYI QTLFKKYNFD GVIHLAAESH VDRSIVAPME FVVTNVIGTV NLLNAAKDAW
KGSNYEGKLF YHVSTDEVYG SLHDDSFFLE TTSYDPQSPY SASKASSDHF VRAYSNTYKL
PVVLTNCSNN YGPNQFPEKL LPLFINNIQN NKALPVYGKG ENIRDWLFVI DHARAIDIVF
HKGKRGETYN IGGHNEWTNI DLIRLLCKQM DQKLGRAEGT SEKLISYVTD RAGHDFRYAI
DATKIKDELG WVPSVTFEQG LSLTIDWYLA NKKWMEEITS GAYESYYEAQ YIKR
|
|---|
| |