Gene CHU_3369 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3369 
Symbol 
ID4185064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3850764 
End bp3851990 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content38% 
IMG OID638073359 
Producthypothetical protein 
Protein accessionYP_679948 
Protein GI110639738 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0686] Alanine dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0502916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.14183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAAAT TAAAAATCGG TATTATTCGC GAAGGTAAAG TACCATCTGA CAGACGGGTA 
CCCTTATTGC CTGCTCAGTG TGTAGAGATT ATGCAGCAAT ACCCGCATGT TGAGATTTTT
GTTCAGCCAA GCGATATCCG TTGTATTTCA AATAAAGAAT ATGTATCTGC CGGTATACCC
ATCAGAGAAG ATTTAAGTTC CTGCGATATA CTTTTAGGTA TAAAAGAAGT GCCGATCTAT
CAGTTGATGG CGGATAAAAC GTATTTGTTT TTTTCTCATA CGATTAAATT ACAGCCTCAC
AATCAAAAAT TGCTGCAGTC TGTTTTAGAA AAACGCATTA CGCTGATTGA TTATGAAGCG
TTGCGAGACA AAGAGAATAA ACGTGTTATT GCCTTTGGAT ATTACGCGGG AATAGTTGGT
GCATACAATG CTTTTTTACT TACAGGTAAA AAGTATAACT TATTTGATTT GAAGCCAGCT
CATAAATGTT ATGATATCAA TGAACTGATA GCTGAATTAA AAAAAGTTGT TTTGCCGCCC
TTGCGGTTTG TGTTAACAGG AGCTGGCAGA GTGGGAAACG GAGCAGAACT GATGTTGAAA
GAAATGGGAA TACAAAAAAT TTCTCCTCAG GATTTTCTTA CTAAAACATA TAAGCATCCC
GTTTACACAC AGATTATTTC AGCAGATTAT AACAGGCTAC CTTCTGCAAA TCAATCGATC
AATATCTGGA ACACCGAACA TTTTCACGAA CATCCGGAAA TGTATCAATC GAATTTCATG
CGTTTCGCAT CTGTAACAGA TGTGCTTATT GCCGGTGCTT ATTGGGATCA GCGCGCACCC
AAATTGTTTA CAACAGAAGA TATTAAACGA TCTGATTTTT CAATCCGTTT AATTGCAGAT
ATTACCTGTG ATATTAACGG ATCCATTCCA ACTACGGTGA AGTCAACAAA CATCTACGAT
CCGGCATATG ATTTCAATCC GTTTACAAAA GACATTGAAG CACCCTTTTC AGATCCGAGA
AATATTACAG TGATGGCGAT AGATAATCTT CCCTGCGAAA TACCACGCAG TGCCTCAGAA
GATTTTGGAA ACCAATTGAT CAAAAATGTA TTACCCGATT TGCTTACCAA GCCTTACGGA
GACCTGATAC AGCGCTGTGC ACTTACAGTT AAAGGAACGC TGGGTCCGCA TTTTAGTTAT
TTAAAGGAAT ATTCAGAAGG GAAGTAA
 
Protein sequence
MTKLKIGIIR EGKVPSDRRV PLLPAQCVEI MQQYPHVEIF VQPSDIRCIS NKEYVSAGIP 
IREDLSSCDI LLGIKEVPIY QLMADKTYLF FSHTIKLQPH NQKLLQSVLE KRITLIDYEA
LRDKENKRVI AFGYYAGIVG AYNAFLLTGK KYNLFDLKPA HKCYDINELI AELKKVVLPP
LRFVLTGAGR VGNGAELMLK EMGIQKISPQ DFLTKTYKHP VYTQIISADY NRLPSANQSI
NIWNTEHFHE HPEMYQSNFM RFASVTDVLI AGAYWDQRAP KLFTTEDIKR SDFSIRLIAD
ITCDINGSIP TTVKSTNIYD PAYDFNPFTK DIEAPFSDPR NITVMAIDNL PCEIPRSASE
DFGNQLIKNV LPDLLTKPYG DLIQRCALTV KGTLGPHFSY LKEYSEGK