| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3350 |
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| Symbol | intQ |
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| ID | 4184600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3829169 |
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| End bp | 3830095 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 638073339 |
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| Product | integrase |
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| Protein accession | YP_679929 |
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| Protein GI | 110639719 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00359362 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00980373 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAATGAGC AGAAGAGAAT TGAAGAGATT ATCCACTTGT GGAAAGCAGA CAAAAAAATG
TATGTTAAAA AATCAAGCTT TTCAGCATAT ATGCTGTTAC TTGAAAATCA TTTATTACCT
GTGTTCGGGA ATAAATATGT TGTTGAAGAG GTAGAAGTAC AAACTTTTGT ATTTCAGAAA
TTGCAACAGG GACTGAGCCA GAAAACAATC AAAGATATGT TGATTGTTTT AAAAATGGTG
CTCAAATTCG GAGCTAAAAA CAAATGGTTA ACATATCATC CGTTCGATAT TCAGTTTCCG
ACACAAAGAG AAAAGCAAAC GATAGAAGTA TTGAGCAGAG GCGATCAACG GAAAGTAATG
CATTATGTTC AGGAGCATTT TACTTTTCGA AATTTGGGTA TATACATTTG TCTGAGTGCA
GGTATCCGGA TAGGAGAGAT ATGTGCTTTA ACTTGGGAAG ATGTAGATAC TGAAAGAGGA
ATTATCCATA TCCGCAGAAC AATACAGCGA ATTTATAACA TAGAAGATGG AATGCGTAAG
ACAGAACTTA TGCTGGATAC ACCTAAAACT AAAAATTCAA TCCGTGAAAT TCCTATGAGC
GGTGATCTGT TAAAAATGCT TAAACCCGTG AAGAAAATTA TCAATAATTC TTTTTTTGTT
CTAACCAATG ATGTAAAACC AACAGAACCC AGAACGTATA GAAGTTATTA TAAAAAATTG
ATGAAAGAAC TGGCTTTGCC TGATCTTAAA TTTCATGGCC TTCGGCATAG CTTTGCCACC
CGATGTATTG AAAGCAAATG TGATTATAAA ACGGTGAGTG TGCTGTTAGG TCATTCCAAT
ATCAGCACTA CATTGAACCT GTATGTGCAT CCTAATCTGG AGCAGAAGAA AAAAGCCATT
GATCAGATGT TTAAAGCATT GAAGTAA
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| Protein sequence | MNEQKRIEEI IHLWKADKKM YVKKSSFSAY MLLLENHLLP VFGNKYVVEE VEVQTFVFQK
LQQGLSQKTI KDMLIVLKMV LKFGAKNKWL TYHPFDIQFP TQREKQTIEV LSRGDQRKVM
HYVQEHFTFR NLGIYICLSA GIRIGEICAL TWEDVDTERG IIHIRRTIQR IYNIEDGMRK
TELMLDTPKT KNSIREIPMS GDLLKMLKPV KKIINNSFFV LTNDVKPTEP RTYRSYYKKL
MKELALPDLK FHGLRHSFAT RCIESKCDYK TVSVLLGHSN ISTTLNLYVH PNLEQKKKAI
DQMFKALK
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