Gene CHU_3347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3347 
SymbolrcsC 
ID4184597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3821998 
End bp3825060 
Gene Length3063 bp 
Protein Length1020 aa 
Translation table11 
GC content43% 
IMG OID638073336 
Productsensor histidine kinase 
Protein accessionYP_679926 
Protein GI110639716 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0428099 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTAA CAGAAAATAA AGATCTTTTT CAGTTGGTAT TTGACTCTGC TGCAAATGGT 
ATTGCAGTAA TGCAATCCGT CTGCAACGAT AAAGGTAAAA TAGATGATTT TTCAATTCTG
CTGTTCAACA AGTACATTCT TAATTGGGTT GGTGATGTAG ATTACAAAGG AAAACTGTAT
ACGAATGTTT TTCCTATGGC AAAGGAAAAT GATATTCTGG GGAAATTTAT TCAAGTTGCC
GAAACAGGTA TCACGGCGAA CTTTGAATGG GCCTATGTTG TCAGCGGGGG GGACTATTGG
TTTCGGTTTA CCGCTGTGAA GCAAGGTGAT CTGCTGGTGG TAACACTTGA AAATATAACG
GAGGCAAAAC AGGGAGAGAT CTCTTTGAAT GCAGCGCTGC ATGCAGCAGA GAAGCAGGAG
CGTCTCTATA ATTCCATTAC CAACAATACA CCTGATCTGG TGTATGTGTT CGGGCTCGAT
TATAGTTTTA CGTATGCCAA TAAAGCCTTG CTCACTATGT GGGGTAAAAC CGCGGAAGAA
GCTATCGGAA AAGGCTTGCG GGAGAATGGG TATGAAGAGT GGCATGCACA GATGCATGAA
CGTGAAATAG ATGAAATAAA AGCTACGAAA AAATCCATAC GCGGAACAGT TTCTTTTCCG
CATGCGGAAT TAGGCAGCCG CATGTACGAT TATATCCTTG TACCGGTTTT AAATGAAAGC
GGAGAAGTAG AAGCAATCGC AGGAACAACC CGTGACATTA CAGATATAAA ACGTATAGAA
GAAAATCTCA AGCAAAGTGA AGCACGTTTC CGTAACCTGC TTCAGGAAGC ACCAGTAGCT
GCAACGTTGT TCCGGGGGAA CGATCTGGTC ATTGAAATTG CAAATGAACT TACCCAGCAA
TACTGGAACA AGGGTAACGA TATTATTGGC AAACCCATTG CTGAAGCCGC GCCGGAACTG
GAAGCACAGG GAATGATCAC GCTGGTAAAA GATATTTACG AACACGGGGG TATTGCTAAT
TATTCAGAAA TACCTATCAC CTTTAAAAAA GAGGGTGTTG TAAAAGATGG TTATTATTCC
TTTTCACTGA AAGCACTGTA TGACAATACC GGTAAGATTG ATGGTATCCT CAGCATAGGT
GTTGATGTTA CAGAACGGGT GAAATGGCGT AAGCAGATTG AAGCGAGCGG AGCCCGCCTG
AAATCTATGA TTGACCAGAC CCCGGCTCCT ACACTGGTAC TGATGGGCGA TAATCTGGTG
ATTGAACAGG TGAACACGTC TATGCTTAAA TTATTAGGGC ACGAAGAAAA CATTGTGGGT
ATACCGCTGC TTACTCTGAT GCCGGAGCTG AAAGGGCAAT ACATCTGGGA GCAGGTTGAA
AAGGTATATA GAGAAGGTAT CCCGTTTGAC CAGTCAGAAG TACGTGTGTC GCATAAACGT
ACGGGCATGA TGGAGGATTA TTATTATAAC ATCGCTTATC GTCCGTTAAA GGAAGACGGA
CGCATAACAG GCATGATTCA GGTAGCCATC GATGTTACAG AGCAGGTTGT TGCCCGTAAA
AAGCTTGAAG AAAGCGAGAG CCGTTTCCGG GCACTGGTGA ATGCTTCATC AGACGTTGTA
TACCGCATGA ATGCAGACTG GACGGTTATG CGTGAACTTG AAGGACGCGA TTTTCTTACC
CCTGCCGGCA CAGCCATGGC CGATTGGGTC GAAACGTATA CATATCGTGA AGACCGCGCG
CTTGTCAAGG CCACCGCGGC TGCCGCTATT GAAGGCAAGC GGATATTTGA ACTGGAACAC
CGGGTATTAA AGGCAGACGG AACTATAGGC TGGACCTTCT CAAGAGCTAT CCCTATACTC
GACGAGCAAG GCAATATTAT TGAATGGTTT GGATCTGCCG CTGATATTAC TGCGGAAAAA
GAGATGCAGG CAATTATAAA AGAGAGTGAA GAAAAGTTCA GCCAGCTGGC TGATCTTGTG
CCACAGATTA TCTGGACAGG AAGTTCGGAT GGTTTTATTG ATTATTACAA TAAGCGCTGG
TATGAATATA CCGGTTTTGA TGGAAAAGCA TTTGGCGATA AGAGCTGGGT GCCTGTCATG
CATCCGGATG ATGTGCAGGA AGTGCTGGAT TGTTGGTATG GAAGTGTAAA GAAAGGTACA
CCATATCAAA TTGAGCTACG GATGAAGAGC GCAGAAACAG GAGAATACCG CTGGTTTTTG
AGTAAAGCAT TGCCGATAAA AGATAAAACG GGTGTCATTA CAAAATGGTT TGGCACATGT
ACCGATATTC ACGAACAAAA AACAATAACC ACAAAACTTG AGCGCCTTGT TGCAGAACGT
ACCAAAGAAC TGCAACGCTC TAATGAGGAC CTGCAGCAGT TTGCACACGT TGCTTCACAT
GATTTAAAAG AGCCGGTTCG AAAAATAAAA ACGTTTGCCG GACGGCTGGA AGATCAGCTT
AAAGATAAGC TGGATGAATC TGCAATACGG TTCATTGAAA AAATAAATGT GGCTACAAAC
CGCATGTCAA ATATGATTGA TGGGGTACTG GCTTACTCAA CAATCAATGC ATCTAAACAG
AAACCTGAAC CTGTTGATCT CAACAATGTG CTTAAAAATA TTGAAACTGA CCTGGAAATT
CCTTTGCAAA AAACACAAGG CGTCATTCAA TATAAAAATC TTCCGGTACT GGAAGGTGCG
CCTGTATTAC TTTATCAGCT CTTCTACAAC CTCATTAATA ACTCCATTAA ATTTGCCAGA
GCTGGTGTGT CGCCCCAGAT AACGATTGTA TCAGAAAACA TGACGGAACA GAGCATGAAC
GTTGTTCGTA TTTCAGTACA GGATAATGGA ATTGGTTTTG AACCGGATCA GGCCGGACAG
ATATTTGAAA CGTTCACCCG CCTGAATTCT AAAGATAAAT ACGAAGGCAC GGGTTTGGGA
TTATCGCTTT GTAAAAAAAT AGTAGAACGG CATGGGGGAA CGATTTTGGC AGACAGCAGC
AAAGGTAACG GCGCCACATT CATTATCACA CTTCCGTTCC TTCAAAAGGA AACCGGGATC
TAG
 
Protein sequence
MDLTENKDLF QLVFDSAANG IAVMQSVCND KGKIDDFSIL LFNKYILNWV GDVDYKGKLY 
TNVFPMAKEN DILGKFIQVA ETGITANFEW AYVVSGGDYW FRFTAVKQGD LLVVTLENIT
EAKQGEISLN AALHAAEKQE RLYNSITNNT PDLVYVFGLD YSFTYANKAL LTMWGKTAEE
AIGKGLRENG YEEWHAQMHE REIDEIKATK KSIRGTVSFP HAELGSRMYD YILVPVLNES
GEVEAIAGTT RDITDIKRIE ENLKQSEARF RNLLQEAPVA ATLFRGNDLV IEIANELTQQ
YWNKGNDIIG KPIAEAAPEL EAQGMITLVK DIYEHGGIAN YSEIPITFKK EGVVKDGYYS
FSLKALYDNT GKIDGILSIG VDVTERVKWR KQIEASGARL KSMIDQTPAP TLVLMGDNLV
IEQVNTSMLK LLGHEENIVG IPLLTLMPEL KGQYIWEQVE KVYREGIPFD QSEVRVSHKR
TGMMEDYYYN IAYRPLKEDG RITGMIQVAI DVTEQVVARK KLEESESRFR ALVNASSDVV
YRMNADWTVM RELEGRDFLT PAGTAMADWV ETYTYREDRA LVKATAAAAI EGKRIFELEH
RVLKADGTIG WTFSRAIPIL DEQGNIIEWF GSAADITAEK EMQAIIKESE EKFSQLADLV
PQIIWTGSSD GFIDYYNKRW YEYTGFDGKA FGDKSWVPVM HPDDVQEVLD CWYGSVKKGT
PYQIELRMKS AETGEYRWFL SKALPIKDKT GVITKWFGTC TDIHEQKTIT TKLERLVAER
TKELQRSNED LQQFAHVASH DLKEPVRKIK TFAGRLEDQL KDKLDESAIR FIEKINVATN
RMSNMIDGVL AYSTINASKQ KPEPVDLNNV LKNIETDLEI PLQKTQGVIQ YKNLPVLEGA
PVLLYQLFYN LINNSIKFAR AGVSPQITIV SENMTEQSMN VVRISVQDNG IGFEPDQAGQ
IFETFTRLNS KDKYEGTGLG LSLCKKIVER HGGTILADSS KGNGATFIIT LPFLQKETGI