Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3347 |
Symbol | rcsC |
ID | 4184597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 3821998 |
End bp | 3825060 |
Gene Length | 3063 bp |
Protein Length | 1020 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638073336 |
Product | sensor histidine kinase |
Protein accession | YP_679926 |
Protein GI | 110639716 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0428099 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTAA CAGAAAATAA AGATCTTTTT CAGTTGGTAT TTGACTCTGC TGCAAATGGT ATTGCAGTAA TGCAATCCGT CTGCAACGAT AAAGGTAAAA TAGATGATTT TTCAATTCTG CTGTTCAACA AGTACATTCT TAATTGGGTT GGTGATGTAG ATTACAAAGG AAAACTGTAT ACGAATGTTT TTCCTATGGC AAAGGAAAAT GATATTCTGG GGAAATTTAT TCAAGTTGCC GAAACAGGTA TCACGGCGAA CTTTGAATGG GCCTATGTTG TCAGCGGGGG GGACTATTGG TTTCGGTTTA CCGCTGTGAA GCAAGGTGAT CTGCTGGTGG TAACACTTGA AAATATAACG GAGGCAAAAC AGGGAGAGAT CTCTTTGAAT GCAGCGCTGC ATGCAGCAGA GAAGCAGGAG CGTCTCTATA ATTCCATTAC CAACAATACA CCTGATCTGG TGTATGTGTT CGGGCTCGAT TATAGTTTTA CGTATGCCAA TAAAGCCTTG CTCACTATGT GGGGTAAAAC CGCGGAAGAA GCTATCGGAA AAGGCTTGCG GGAGAATGGG TATGAAGAGT GGCATGCACA GATGCATGAA CGTGAAATAG ATGAAATAAA AGCTACGAAA AAATCCATAC GCGGAACAGT TTCTTTTCCG CATGCGGAAT TAGGCAGCCG CATGTACGAT TATATCCTTG TACCGGTTTT AAATGAAAGC GGAGAAGTAG AAGCAATCGC AGGAACAACC CGTGACATTA CAGATATAAA ACGTATAGAA GAAAATCTCA AGCAAAGTGA AGCACGTTTC CGTAACCTGC TTCAGGAAGC ACCAGTAGCT GCAACGTTGT TCCGGGGGAA CGATCTGGTC ATTGAAATTG CAAATGAACT TACCCAGCAA TACTGGAACA AGGGTAACGA TATTATTGGC AAACCCATTG CTGAAGCCGC GCCGGAACTG GAAGCACAGG GAATGATCAC GCTGGTAAAA GATATTTACG AACACGGGGG TATTGCTAAT TATTCAGAAA TACCTATCAC CTTTAAAAAA GAGGGTGTTG TAAAAGATGG TTATTATTCC TTTTCACTGA AAGCACTGTA TGACAATACC GGTAAGATTG ATGGTATCCT CAGCATAGGT GTTGATGTTA CAGAACGGGT GAAATGGCGT AAGCAGATTG AAGCGAGCGG AGCCCGCCTG AAATCTATGA TTGACCAGAC CCCGGCTCCT ACACTGGTAC TGATGGGCGA TAATCTGGTG ATTGAACAGG TGAACACGTC TATGCTTAAA TTATTAGGGC ACGAAGAAAA CATTGTGGGT ATACCGCTGC TTACTCTGAT GCCGGAGCTG AAAGGGCAAT ACATCTGGGA GCAGGTTGAA AAGGTATATA GAGAAGGTAT CCCGTTTGAC CAGTCAGAAG TACGTGTGTC GCATAAACGT ACGGGCATGA TGGAGGATTA TTATTATAAC ATCGCTTATC GTCCGTTAAA GGAAGACGGA CGCATAACAG GCATGATTCA GGTAGCCATC GATGTTACAG AGCAGGTTGT TGCCCGTAAA AAGCTTGAAG AAAGCGAGAG CCGTTTCCGG GCACTGGTGA ATGCTTCATC AGACGTTGTA TACCGCATGA ATGCAGACTG GACGGTTATG CGTGAACTTG AAGGACGCGA TTTTCTTACC CCTGCCGGCA CAGCCATGGC CGATTGGGTC GAAACGTATA CATATCGTGA AGACCGCGCG CTTGTCAAGG CCACCGCGGC TGCCGCTATT GAAGGCAAGC GGATATTTGA ACTGGAACAC CGGGTATTAA AGGCAGACGG AACTATAGGC TGGACCTTCT CAAGAGCTAT CCCTATACTC GACGAGCAAG GCAATATTAT TGAATGGTTT GGATCTGCCG CTGATATTAC TGCGGAAAAA GAGATGCAGG CAATTATAAA AGAGAGTGAA GAAAAGTTCA GCCAGCTGGC TGATCTTGTG CCACAGATTA TCTGGACAGG AAGTTCGGAT GGTTTTATTG ATTATTACAA TAAGCGCTGG TATGAATATA CCGGTTTTGA TGGAAAAGCA TTTGGCGATA AGAGCTGGGT GCCTGTCATG CATCCGGATG ATGTGCAGGA AGTGCTGGAT TGTTGGTATG GAAGTGTAAA GAAAGGTACA CCATATCAAA TTGAGCTACG GATGAAGAGC GCAGAAACAG GAGAATACCG CTGGTTTTTG AGTAAAGCAT TGCCGATAAA AGATAAAACG GGTGTCATTA CAAAATGGTT TGGCACATGT ACCGATATTC ACGAACAAAA AACAATAACC ACAAAACTTG AGCGCCTTGT TGCAGAACGT ACCAAAGAAC TGCAACGCTC TAATGAGGAC CTGCAGCAGT TTGCACACGT TGCTTCACAT GATTTAAAAG AGCCGGTTCG AAAAATAAAA ACGTTTGCCG GACGGCTGGA AGATCAGCTT AAAGATAAGC TGGATGAATC TGCAATACGG TTCATTGAAA AAATAAATGT GGCTACAAAC CGCATGTCAA ATATGATTGA TGGGGTACTG GCTTACTCAA CAATCAATGC ATCTAAACAG AAACCTGAAC CTGTTGATCT CAACAATGTG CTTAAAAATA TTGAAACTGA CCTGGAAATT CCTTTGCAAA AAACACAAGG CGTCATTCAA TATAAAAATC TTCCGGTACT GGAAGGTGCG CCTGTATTAC TTTATCAGCT CTTCTACAAC CTCATTAATA ACTCCATTAA ATTTGCCAGA GCTGGTGTGT CGCCCCAGAT AACGATTGTA TCAGAAAACA TGACGGAACA GAGCATGAAC GTTGTTCGTA TTTCAGTACA GGATAATGGA ATTGGTTTTG AACCGGATCA GGCCGGACAG ATATTTGAAA CGTTCACCCG CCTGAATTCT AAAGATAAAT ACGAAGGCAC GGGTTTGGGA TTATCGCTTT GTAAAAAAAT AGTAGAACGG CATGGGGGAA CGATTTTGGC AGACAGCAGC AAAGGTAACG GCGCCACATT CATTATCACA CTTCCGTTCC TTCAAAAGGA AACCGGGATC TAG
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Protein sequence | MDLTENKDLF QLVFDSAANG IAVMQSVCND KGKIDDFSIL LFNKYILNWV GDVDYKGKLY TNVFPMAKEN DILGKFIQVA ETGITANFEW AYVVSGGDYW FRFTAVKQGD LLVVTLENIT EAKQGEISLN AALHAAEKQE RLYNSITNNT PDLVYVFGLD YSFTYANKAL LTMWGKTAEE AIGKGLRENG YEEWHAQMHE REIDEIKATK KSIRGTVSFP HAELGSRMYD YILVPVLNES GEVEAIAGTT RDITDIKRIE ENLKQSEARF RNLLQEAPVA ATLFRGNDLV IEIANELTQQ YWNKGNDIIG KPIAEAAPEL EAQGMITLVK DIYEHGGIAN YSEIPITFKK EGVVKDGYYS FSLKALYDNT GKIDGILSIG VDVTERVKWR KQIEASGARL KSMIDQTPAP TLVLMGDNLV IEQVNTSMLK LLGHEENIVG IPLLTLMPEL KGQYIWEQVE KVYREGIPFD QSEVRVSHKR TGMMEDYYYN IAYRPLKEDG RITGMIQVAI DVTEQVVARK KLEESESRFR ALVNASSDVV YRMNADWTVM RELEGRDFLT PAGTAMADWV ETYTYREDRA LVKATAAAAI EGKRIFELEH RVLKADGTIG WTFSRAIPIL DEQGNIIEWF GSAADITAEK EMQAIIKESE EKFSQLADLV PQIIWTGSSD GFIDYYNKRW YEYTGFDGKA FGDKSWVPVM HPDDVQEVLD CWYGSVKKGT PYQIELRMKS AETGEYRWFL SKALPIKDKT GVITKWFGTC TDIHEQKTIT TKLERLVAER TKELQRSNED LQQFAHVASH DLKEPVRKIK TFAGRLEDQL KDKLDESAIR FIEKINVATN RMSNMIDGVL AYSTINASKQ KPEPVDLNNV LKNIETDLEI PLQKTQGVIQ YKNLPVLEGA PVLLYQLFYN LINNSIKFAR AGVSPQITIV SENMTEQSMN VVRISVQDNG IGFEPDQAGQ IFETFTRLNS KDKYEGTGLG LSLCKKIVER HGGTILADSS KGNGATFIIT LPFLQKETGI
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