| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3219 |
|---|
| Symbol | |
|---|
| ID | 4184744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 3668426 |
|---|
| End bp | 3669154 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638073212 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_679802 |
|---|
| Protein GI | 110639592 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACTAG ATTCTACCGA ACAGCCGCAC GATCCGATTC AGGAATTCGA ACATTTTTTT
ACAGTTGTAT TTGAAGACAA TCATCTCATT GCTGTAAATA AAAAAAACGG AGTGCTTGTA
CAAGGTGATG ATACAGGTGA TAAGCCCTTG TCAGAACTGG TAAAAGAATA TTTAAAAAAG
AAATACAACA AACCCGGAAA TGTTTTTGCG GGTGTCATTC ACCGTATAGA CCGGCCGGTA
AGCGGGTTGG TGCTGCTGGC GAAAACGTCT AAAGCACTGG AACGGATGAA CAAACAGTTT
GCGGACAAAA AAATCCAGAA AGCATATCTG ATGGTTAGCG GAAGTAAACC CAATCCCGCT
TCCGCCAAAC TTGTGCACTG GTTAACAAAA GATGCCAAAC GCAATATTGC AAAAGCGCAT
ACGTCTGAAG TGAAAGAAAG TAAATATTGT GAACTCTCCT ATTCCTTGTT AACATCGAGT
GACCGGTATT TTTTAATTGA AGTAAAACCC GTTACCGGCA GGTCGCACCA GATACGTTGT
CAGATGGCAA GTATCGGCTG TGTCATAAAG GGCGATTTAA AGTACGGAGC GCCGCGCAGC
AACCCCGATG GAGGTATTTG CTTACATTCG CACAAACTAA GCTTTCAGCA TCCTGTAACA
GGCGATAATA TGCAGCTGAA AGCTGATCCG CCTAAAGGGG AACCCTGGAA TGCATTGCTA
AAGAAATAA
|
|---|
| Protein sequence | MLLDSTEQPH DPIQEFEHFF TVVFEDNHLI AVNKKNGVLV QGDDTGDKPL SELVKEYLKK
KYNKPGNVFA GVIHRIDRPV SGLVLLAKTS KALERMNKQF ADKKIQKAYL MVSGSKPNPA
SAKLVHWLTK DAKRNIAKAH TSEVKESKYC ELSYSLLTSS DRYFLIEVKP VTGRSHQIRC
QMASIGCVIK GDLKYGAPRS NPDGGICLHS HKLSFQHPVT GDNMQLKADP PKGEPWNALL
KK
|
|---|
| |