| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3168 |
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| Symbol | rpoC |
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| ID | 4186657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3602773 |
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| End bp | 3607089 |
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| Gene Length | 4317 bp |
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| Protein Length | 1438 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638073156 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_679750 |
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| Protein GI | 110639541 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.694613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTCA GAAAAAACAA AAAACTGAAT AACGATTTCA CAAAAGTAAC CATCAGTCTT
GCTTCTCCAG AATCAATTCT TGAAGGCTCT CATGGTGAGG TTACACAACC GGAAACAATC
AACTACAGAA CATACAAGCC AGAGATGGGT GGTTTGTTCT GTGAGCGGAT TTTCGGTCCG
GTAAAAGACT GGGAATGTCA CTGCGGTAAA TACAAACGTA TTCGTTACAA AGGCATTATT
TGTGATCGTT GCGGGGTTGA AGTAACAGAG AAAAAAGTTC GTCGTGAACG TATGGGTCAC
ATCGAATTAG TTGTACCTGT AGCACACATC TGGTATTTCC GTTCATTACC AAACAAGATC
GGTTACATGT TAGGTTTACC TACAAAGAAA CTTGATCAGA TCATATACTA CGAACGTTAT
GTTGTTATTC AATCAGGTGT TAAATCTGAA GACGGTATCA ACTACCTTGA TTTCCTTACT
GAAGATGAAT ATCTGGATAT CTTAGATAAA CTTCCTCGTG AGAATCAATT ATTAGACGAT
AAAGATCCAA ATAAATTCAT CGCTAAGATG GGTGCAGACG CGTTAGAAAC ACTTCTTTCC
CGTTTGAACT TAGATGAATT ATCATACAGC TTACGTCATG CGGCAGCAAA CGACACTTCT
CAGCAACGTA AAGCGGAAGC GCTTAAACGT TTGAAAGTTG TTGAAGCTTT CCGTGATGCA
AGATCCCGTA TAGAAAACAA ACCGGAATGG ATGATTATCC GCATGGTTCC TGTGATTCCC
CCGGAATTAC GTCCATTAGT GCCGTTGGAT GGTGGTCGTT TCGCTACATC CGATTTAAAT
GATCTTTACA GACGTGTTAT TATCCGTAAC AACCGTTTGA AAAGATTGAT CGAAATCAAA
GCTCCGGAAG TAATCTTACG TAACGAAAAA CGTATGCTTC AGGAAGCGGT AGATTCATTG
TTCGACAACT CACGTAAGAT AAACGCTGTA CGTGCAGAAG GTAACAGAGC ATTGAAATCA
CTTTCAGATA TGTTGAAAGG TAAGCAGGGA CGTTTCCGTC AGAACTTACT TGGTAAACGT
GTCGATTACT CTGGCCGTTC TGTAATCGTT GTAGGACCTG AATTGAAAAT GCACGAATGC
GGTCTTCCGA AAGATATGGC AGCTGAATTA TTCAAGCCAT TTATCATTCG TAAGCTGATC
GAACGTGGTA TCGTAAAAAC AGTTAAGTCT GCTAAGAAAA TAGTGGATCG TAAAGATCCG
GTTGTTTGGG ATATTCTTGA AAACGTATTG AAAGGTCACC CGATCCTTTT AAACCGTGCT
CCTACACTTC ACCGTTTAGG TATTCAGGCA TTCCAGCCAA AATTGATTGA AGGAAAAGCA
ATTCAGTTAC ACCCCTTAGT GTGTACTGCC TTCAACGCCG ATTTCGATGG TGACCAGATG
GCGGTTCACG TTCCACTGGG ACATGAGGCT ATTCTTGAAG CATCATTATT GATGATTGCA
TCTCATAACA TCCTGAACCC TGCGAATGGT GCGCCAATTA CAGTACCATC TCAAGACATG
GTTCTTGGAT TATATTATGT AACAAAAGGC CGTAAGTCTA CACCTGAGCA CCCGATCAAA
GGTGAAGGTA TGGCATTCTA CGGTGCTGAA GAAGTTGTGA TCGCTATCAA CGAAGGTCGC
TTATCACAAC ATGCACATAT CAAAGTTAAA GGTATCGTAC GTACAGATGC CGGTGAATTA
GTTGAACAAA TGATTGATAC CGTTGCCGGT AGAGTATTGT TCAACTTAGT AGTTCCGGAA
GAAGTAGGTT TCGTAAACGA ACTGTTAACG AAGAAAAAAT TACAGTTGAT CATTGGTATG
GTATTCAAGA TCGCTGGTAT GTCTAAAACT GCGAAGTTCC TGGATGATAT CAAGCAGATC
GGATTCCAGA TGGCCTTCAG AGGTGGTCTT TCTATCGGTT TGGATAACAT TGGTATCCCC
GCTGATAAAA ATACATTGAT CGATGGCGCT AAGAAAGAAG TTGATTCAGT ATGGAGCAAC
TACTTAATGG GTCTTATCAC AGACAACGAA CGTTACAACC AGGTTATTGA TATCTGGACG
CGTGTGAACT CTGAGATCAC AGATACATTG ATGAAACAGC TTGAAGCTGA TCAGCAAGGT
TTCAACCCGA TCTACATGAT GATGCACTCC GGAGCACGTG GTTCTCGTGA GCAGATCCGT
CAATTAGGTG GTATGAGAGG TTTGATGGCT AAGCCACAAA AGAACTTACA AGGTTCAGTT
GGTGAGATCA TCGAAAACCC GATCCTTTCC AACTTCAAAG AAGGTCTGGA TGTAATCGAA
TACTTTATCT CTACACACGG TGCTCGTAAA GGTCTTGCCG ATACAGCCCT TAAAACGGCC
GATGCAGGTT ACTTAACACG TCGTTTGGTT GACGTCGCAC AAGATGCAAT TATCAACGAA
CAGGATTGCG GTACATTAAG AGGTCTTACA GTTTCTGCAT TAAAAGACAA CGACGATATC
GTTGAACCGT TAACAGAACG TATCCTTGGT AGAGTAAGCG TTCACGATGT ATTCCATATT
ATTTCAAATG AATTGTTGGT TTCTTCCGGA CAGGAAATTA CAGAAGAAAT TGCAAGAAGC
ATAGATGATT CAGGCATTGA ATCTGTTGAA ATCAGATCCG TTCTTACGTG TGAATCAAGA
AGAGGATGTT GTGCAAAATG TTACGGTAGA AACTTGTCAT CCGGTCAAAT GGTTGGTATT
GGAGAATCTG TAGGTGTTAT CGCAGCACAA TCCATTGGTG AACCAGGTAC ACAGTTAACA
CTTCGTACAT TCCACGTGGG TGGTACGGCA TCTAACATTA CTGTTGATGC AAACATCAAA
GCTAAGTTTG ATGGTGTAGT TGCTTTTGAT GATTTAAGAG TAATTCAATC TACAAACTTA
GAAGGCGATA AAGTAACTGT AGTAATGGGC CGTTCAGGTG AGATTCGTAT CGTTGAGCCG
GTATCTGGCA AAACGTTATT GAGTAACCAC GTTCCATACG GTGCATTCTT AAATGTGAAA
GATGGTGAAA CGGTTAAAAA AGGTCAGGAA CTTTGCTTCT GGGATCCATA TAACGCTGTT
ATCTTATCTG AATTCGAAGG TACAATCCAA TTCGATTCAA TCGAAGAAGG TGTAACATAC
CGCGAAGAAT CTGATGAACA GACTGGCCAC AGAGAAAAAG TTATTGTTGA TACAAAAGAT
AAAACGAAAA ACCCTGCAAT CATTGTAAAC CATAAGAAAG GCGAACCAAA AGGATACAGC
ATCCCGGTAG GCGCCCACTT AGCAGTTGAA GATGGACAGG ATGTTAAACC TGGTCAGGTA
TTAGTTAAGA TCCCTCGTTC TGTTGGTAAA ACAAGAGATA TTACGGGTGG TCTTCCACGT
GTAACTGAAT TGTTCGAAGC ACGTAACCCT TCTAATCCTG CTGTAGTAAG TGAGATTGAT
GGTATCGTAA CGTACGGCGC AATTAAGAGA GGTAACAGAG AGATCTTTAT TGAATCAAAA
GATGGTGTTA AAAAGAGATA CATGGTACCG CTTTCCAAAC ACATCCTTGT TCAGGACAAC
GATTTCATCC GTTCAGGAAA TCCGTTGACA GATGGAGCAA TTACTCCATC AGATATCTTA
TCAATCAAAG GACCTACAGC TGTTCAGGAA TATCTTGTAA ATGAAATTCA AGAAGTATAC
CGTCTGCAAG GTGTAAAAAT CAATGATAAA CACATTGAGA TTATTGTTAG ACAGATGATG
CAAAAGGTTC AGATTATCGA AGCCGGGGAT ACATCTTTCT TAACAAACCA GGCAGTGGAT
CGTTTCAAAT TCAGAGAAGA AAACGATAAT ATCCTGGATA AGAAAGTTGT TGTAGAATGT
GGCGACTCAG AAAAATTAAG ACCAGGTATG ATCATTACTG CACGTCAGTT AAGAGACGAA
AACTCTAGCT TGAAACGTAA GGATCAACGT TTGGTAGTAG TTAGAGATGC TGAACCAGCA
GTTTCTATGC CAACACTTCA AGGTATTACT CAAGCTTCTT TGGATACAGA AAGTTTCATC
TCTGCAGCGT CGTTCCAGGA AACGACAAAA GTACTCAGCG AAGCAGCAGT AAGAGGAAAA
GTAGATTTCT TAAAAGGCTT GAAAGAAAAC GTAATCGTAG GTCACTTAAT CCCTGCAGGT
ACAGGTCAGC GTGTATTCAA TGACATTATC GTAGGATCAA AAGAAGAATA CGATAGTTTG
ATCGCTTCGA AAGAAGCCTT CAATGCTGCC CGCAAAGGCG AGTTACAACA GAGTTAA
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| Protein sequence | MAFRKNKKLN NDFTKVTISL ASPESILEGS HGEVTQPETI NYRTYKPEMG GLFCERIFGP
VKDWECHCGK YKRIRYKGII CDRCGVEVTE KKVRRERMGH IELVVPVAHI WYFRSLPNKI
GYMLGLPTKK LDQIIYYERY VVIQSGVKSE DGINYLDFLT EDEYLDILDK LPRENQLLDD
KDPNKFIAKM GADALETLLS RLNLDELSYS LRHAAANDTS QQRKAEALKR LKVVEAFRDA
RSRIENKPEW MIIRMVPVIP PELRPLVPLD GGRFATSDLN DLYRRVIIRN NRLKRLIEIK
APEVILRNEK RMLQEAVDSL FDNSRKINAV RAEGNRALKS LSDMLKGKQG RFRQNLLGKR
VDYSGRSVIV VGPELKMHEC GLPKDMAAEL FKPFIIRKLI ERGIVKTVKS AKKIVDRKDP
VVWDILENVL KGHPILLNRA PTLHRLGIQA FQPKLIEGKA IQLHPLVCTA FNADFDGDQM
AVHVPLGHEA ILEASLLMIA SHNILNPANG APITVPSQDM VLGLYYVTKG RKSTPEHPIK
GEGMAFYGAE EVVIAINEGR LSQHAHIKVK GIVRTDAGEL VEQMIDTVAG RVLFNLVVPE
EVGFVNELLT KKKLQLIIGM VFKIAGMSKT AKFLDDIKQI GFQMAFRGGL SIGLDNIGIP
ADKNTLIDGA KKEVDSVWSN YLMGLITDNE RYNQVIDIWT RVNSEITDTL MKQLEADQQG
FNPIYMMMHS GARGSREQIR QLGGMRGLMA KPQKNLQGSV GEIIENPILS NFKEGLDVIE
YFISTHGARK GLADTALKTA DAGYLTRRLV DVAQDAIINE QDCGTLRGLT VSALKDNDDI
VEPLTERILG RVSVHDVFHI ISNELLVSSG QEITEEIARS IDDSGIESVE IRSVLTCESR
RGCCAKCYGR NLSSGQMVGI GESVGVIAAQ SIGEPGTQLT LRTFHVGGTA SNITVDANIK
AKFDGVVAFD DLRVIQSTNL EGDKVTVVMG RSGEIRIVEP VSGKTLLSNH VPYGAFLNVK
DGETVKKGQE LCFWDPYNAV ILSEFEGTIQ FDSIEEGVTY REESDEQTGH REKVIVDTKD
KTKNPAIIVN HKKGEPKGYS IPVGAHLAVE DGQDVKPGQV LVKIPRSVGK TRDITGGLPR
VTELFEARNP SNPAVVSEID GIVTYGAIKR GNREIFIESK DGVKKRYMVP LSKHILVQDN
DFIRSGNPLT DGAITPSDIL SIKGPTAVQE YLVNEIQEVY RLQGVKINDK HIEIIVRQMM
QKVQIIEAGD TSFLTNQAVD RFKFREENDN ILDKKVVVEC GDSEKLRPGM IITARQLRDE
NSSLKRKDQR LVVVRDAEPA VSMPTLQGIT QASLDTESFI SAASFQETTK VLSEAAVRGK
VDFLKGLKEN VIVGHLIPAG TGQRVFNDII VGSKEEYDSL IASKEAFNAA RKGELQQS
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