Gene CHU_3162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3162 
SymbolrplC 
ID4186651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3598067 
End bp3598687 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content39% 
IMG OID638073150 
Product50S ribosomal protein L3 
Protein accessionYP_679744 
Protein GI110639535 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.596382 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGGTA TTATAGGTAA AAAAGTAGGG ATGACAAGCG TATATGATGC AGTAGGGAAT 
TATGTTCCTT GTACTGTAAT CGAAGCTGGT CCTTGCGTTA TCACGCAAAT CAAAACTGTA
GAAACAGACG GTTACAAAGC TGTTCAGTTA GCTTTCGATG ATAAAAAAGA AAAGAGCACG
ACTAAGCCTC TTTTGGGTCA TTTCAAAAAA GCAGGTGTTT CTCCAAAAAG AAAGCTTGTT
GAATTCAAAG GTTTTGAAAA TGAATTGACT CTTGGTCAAT CTTTAGCAGC ACAAGACGTA
TTCGTAGAAG GTGACTTCGT GGATGTAGTT GGTACTGCAA AAGGTAGAGG TTTCCAAGGT
GTTGTAAAAA GACATGGTTT TGGTGGTGTG GGTGGTCAAA CTCACGGTCA GCATAACAGA
GCTCGTCACG CTGGTTCAAT TGGTGCATGT TCTTTCCCTG CACGTGTATT TAAAGGTACT
CGTATGGCTG GTAGAATGGG CAACAACAGA GTTAAAATTC AGAATTTACA AATTTTGAAA
GTTTATCCTG AGCACAACTT ATTAGTTGTT AGTGGTTCTG TACCAGGTTC TAAAAATTCT
TACGTTTTAA TTGAGAAGTA A
 
Protein sequence
MSGIIGKKVG MTSVYDAVGN YVPCTVIEAG PCVITQIKTV ETDGYKAVQL AFDDKKEKST 
TKPLLGHFKK AGVSPKRKLV EFKGFENELT LGQSLAAQDV FVEGDFVDVV GTAKGRGFQG
VVKRHGFGGV GGQTHGQHNR ARHAGSIGAC SFPARVFKGT RMAGRMGNNR VKIQNLQILK
VYPEHNLLVV SGSVPGSKNS YVLIEK