| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3100 |
|---|
| Symbol | ispD |
|---|
| ID | 4186550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 3536964 |
|---|
| End bp | 3537650 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638073088 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_679682 |
|---|
| Protein GI | 110639473 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCATA TGAATAGATT TGCTGTAATT GTTGCCGGAG GATCGGGTTC AAGGATGGGA
AGTGATACAC CAAAGCAATT CCTTCCGATT GGAAATGCTC CTATTTTAAT GCATACCATT
AAACGGTTTT TTACCAGTAC CGAAGCGGTA AATATTATTC TGGTATTGCC GGAAGAACAA
ATGGACCGCT GGCATCAGCT GTGTGAAAAG TATTCCTTTT CCATTCCGCA CTTAATTGTT
TCCGGCGGGA AAAACCGGTT TCAGTCGGTA CGGAACGGAT TGAACAGCAT TGGCGTGAAC
GACGGCCTGG TCGCTATTCA CGACGGGGTA CGGCCGTTCA TAAGCAAGCG TATTATCGAA
GAATCATTTA AGGTTGCTCT TGAAAAAGGA AACGCGGTAG CCGCGGTGGA ATTAAAGGAT
TCGATCCGGC TGGTGGATAA AAAAGGAAAC AAAACAGTTA ACCGGGTTGA TTACCGGATT
GTGCAGACAC CTCAAACATT TAAGATTTCG CAGGTCAGAG ACGCCTTTCA CCGTGCCTCA
AACGATCAGT ATACAGACGA TGCAAGTGTG GCTGAAGCGG CAGGGTACAG CATACAGCTG
ATTGAAGGTT CTTATGAGAA CATTAAAATC ACAACGCCTG AAGACCTTGC CATGGCAGAA
GCTATTCTGA AAAAATTCGA CTACTAA
|
|---|
| Protein sequence | MHHMNRFAVI VAGGSGSRMG SDTPKQFLPI GNAPILMHTI KRFFTSTEAV NIILVLPEEQ
MDRWHQLCEK YSFSIPHLIV SGGKNRFQSV RNGLNSIGVN DGLVAIHDGV RPFISKRIIE
ESFKVALEKG NAVAAVELKD SIRLVDKKGN KTVNRVDYRI VQTPQTFKIS QVRDAFHRAS
NDQYTDDASV AEAAGYSIQL IEGSYENIKI TTPEDLAMAE AILKKFDY
|
|---|
| |