Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3040 |
Symbol | rluA |
ID | 4183423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 3482578 |
End bp | 3483300 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638073029 |
Product | pseudouridylate synthase |
Protein accession | YP_679623 |
Protein GI | 110639414 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.523078 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGG TTGATATTAA GGATTTAATC ATTTTTGAAA ATGATGACTA TTTTTTTATC AATAAACCTC CTTTTATTTC TTCTCTGGAT GAACGTACCG GCGGCGCTCC AAGCATTATA CGGATGGCTA AGGAATACTG GCCTGACGCG CAGCTTTGCC ACCGGATAGA TAAGGAAACC TCCGGTGTAC TGGCAGTGGC TAAAAACCCT GCCGCCTACA GGCATTTATC TATGGCATTT GAATCCAGAA ATGTAACCAA GGAATACCAT GCAGTAGTAA ATGGAACACA TGATCTGGAT GGGGTAGATG TCTACCTGCC GATTTTGGTG TTGCCTACCG GAACAGTCAA AATTGATAAA TCAAAGGGGA AATTAGCAGA AACCATTTTC TTCACGATTC AGGCCTATAA AAAAGCAACA CTCGTGCGTT GTTTACCAAT TACAGGCCGT ATGCACCAGA TCCGGATACA CCTCGCTACA CTTGGTGCAT CGATTGTCGG GGATGAAACC TATGGCGGGA AGCCTCTCTT TCTTTCAGAA ATTAAAAGAA AAAAATTTAA TTTGAAAAAA GATTCAGAGG AGCGTCCATT AATTCAGCGG TTTGCGTTAC ACGCTAATTC TCTGATATTT ACAGATATGA ATGAGCAGAT TTTAGACATA AAAGCACCGT ATCCCAAGGA TTTTGATGTG CTTGTAAAAA AATTAGAAGA GTATTCTTCA TGA
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Protein sequence | MKKVDIKDLI IFENDDYFFI NKPPFISSLD ERTGGAPSII RMAKEYWPDA QLCHRIDKET SGVLAVAKNP AAYRHLSMAF ESRNVTKEYH AVVNGTHDLD GVDVYLPILV LPTGTVKIDK SKGKLAETIF FTIQAYKKAT LVRCLPITGR MHQIRIHLAT LGASIVGDET YGGKPLFLSE IKRKKFNLKK DSEERPLIQR FALHANSLIF TDMNEQILDI KAPYPKDFDV LVKKLEEYSS
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