| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2979 |
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| Symbol | |
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| ID | 4185088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3411670 |
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| End bp | 3414834 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638072966 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_679562 |
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| Protein GI | 110639353 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.864707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCTA AAATACTTCT TTTCGTTCTT TTGTTCGCGA GTGCTTTTTT TGCATCCGGA
CAACAGGATA TTTCTCAACA GCGCGCAGAG ATGGAAGCAT TGGTTTCATC CGGCAATTAT
ACCGCTGCAT TAAAAAAAGC ACTTGAAATA AAAAAGATCA CGGAGAAGAA ATTTGGTTCT
TCCCATGTGG AGCATGCACA ATCGGTATTA GATGTAGCGG TGGTGTATTA TTATTTATTT
GATTGCAGCA ACAGCGAACT GAACATTGAA GCGGCAAAAA ACATCTATGC AAAAACGAGT
GGTATTAAAT CCTATGCGTA TGCAAATGCC TTACAAAATC AATCGTATAT ATTTTTGACG
TGCAACAAAC CGGAAAAGGC GGAAGAGGCA GCCACTCAGG CGATAAAGAT CATTCAGGAA
AATGTGTCTG ACAGTACACG CCTGCTTGCG ACCTTATATT CAGATCTGGG TTATGTACAG
ACAACACTCG GCAAAATTCC CGATGCGAAA AGGAACTACG ATAAAAGTTA TAGCTTAATG
AATCGCTATG GATTTATTCA TGGAGAAGAA TATGCGTTCC TGTTAAACAA CATTGCAAGT
TTTTATCACG ACCTGTCAGA TTATACATCG GCAAAAAAAT ACTACGATGA ATCGCTGCTG
ATCCATAAAA AAGTATTTGG TTCAGATGCA CCTGAATATG CAACGGTATT AAACAATGAA
GGCATTCTGG ATCTGGATTT TGGTTATTAC GAAGAAGGCG CACAGCTTAT TTTTAAAGCA
GCAGCTATTT ATAAAAATAC CAAAGGTGAA AAAAGTCTGG AGTATGCACG GTCCATGAAT
GATATCGGAA ATGTGTACGA CAAAGAATCA GACTATAAAA ATGCCGAACA ATATTATCTG
AAAGCCCTGC AGTTAAAGAA AGAATTGGGC GTTGAAGGAA ATGTAACATA CTGGAACACC
TTAAACAATC TGGCATTGCT GTACGCACGT TTGGGCAATT ACTCCAAAGC AATTTCAACC
ATGCAGGGGC AGCTGGAATT GATTAAAAAA TATGGCGGGC AAACACAGCC GGAGTATGGT
AATTACCTGA ATTCAATGGG AGCCATTTAT GAGCAGAACA ATGATTATAC AAATGCATCT
GTTTATTTTA ATCAGGCGCT GCAGTTTTAT AAAACCTATT ACGGGGTATC CGATCCCAAT
TATTCCAGGG TATTAAATAA CTTAGGATTA CTTGCGGTGA AACAAGGTAA AACGCAGCTG
GCCTTTCAAT ATTACAATCA GTCATTAGCA ATACTGGAAC GTGATACGAT CGCAAATCAG
ATTGAGATTG CAGATACCTA CAACAACATG GGGGAACTGC ATTCTGAAAC GGGAGATTTT
ACCAGCGCAT CGGTTGAATT TCAAAAGGCA CTGCGCATAT ATGACAGCGT ACTGGGGAAA
AAACATCCTT CCTATTGGAT TACCTATTCA AACGATGCAT TACTCCAATA CCGTTCGGGC
AATACAAACA AAGCCATTCA GCAGACAAGG CAAGTACTTG ACATGAACCT GTCTATGGTA
TACGATAATT TTACTTTTTT AAGCGAAGCA GAAAAATTAA AATACTGGAA CAAAACATAC
GATCAGTTTG AATTTTATAA TTCAATGTGT GTAAAAGAAT ATACGGCTAT TCCGGAACTG
ATCGGTTCCA TGTATAATTA TTCATTGGCA ACAAAATCAC TGGTATTCAA TTATACCAAT
CAGTTAAAAT CAAAAATCCT GCAGCACGGC AATAAAGAAT TATTAAAAGA GTATGTGGCC
TGGGAAAACA AAAAACAATT ATTAGCCACC TATTATAATT TTTCTAAACA GCAGCTGGCA
ACCAACAATA TTAACCTGCC TGCATTGGAA TCAGAAGTAA ACCTGATGGA AAAAAATATT
GTGTTGCAAT CGGCTGCGTT TAAAATAGCA CGTGATGTCC GGAACATAAC CTGGAAAGAT
ATACAGGCTA AGTTAAAAGA AAACGAAGCG GCGGTACAAA TGCTTCGGGT AAAGCTGTAT
AACAATGTCT GGACAGACTC TATTGTATAT GTAGCATTGA TTCTTACCAA AGAAACCGTT
GACAAACCGA TTATGGTTGT GTTGAAAAAC GGGAATAAAC TGGAAAAAAA ATATTACAAT
GGATTTTTCA ATGCCATTCA ATTCGATCAG GTGACAGATT TATATTACAC TGTTTTCTGG
AAAGAAATTG ATCAGCATAT CCTGAACAAA ACAACTGTGT ATGTATCACC TGCCGGTGTG
TATAATAAAA TAAGTTTACC GGCTTTAAAA TTACCAGACG GTAGTTATTT ACTTGAAAAA
CGAAATATAC AGATTGTGCC GGTCATGCGC TCGATCGCTG CTTACGCACC ATCCAATGTA
CGCCAGTCGG ATAAAGCATT TCTGTTCGGC CATCCGAATT ATAATTATAC ATTGCCTGCT
GATACCGCTG CAACAAGAAG TGTAGAAGCG GTTCAGCCGC TTGCAGATGA GTTAAGAGGC
ACGGAGCTTG CAGACCTGCC GGGAACAAAA ATTGAAGTCG ATAATATTTC AGGGATTTTA
AATGCGTATG GCATTCCTGT TAATACGTAT ACCGGCAACA ACGCTTCTGA AACAGAAATA
AAAAAACTCG TGAATCCAAG TGTGCTGCAT ATTGCCACGC ATGGATATTT TATAAAGAAT
GCAGAAATAG AAGAAGCAGG TACAGCTACA ACGGCAACAA ACTACAAAGA AAATCCCTGG
CTGCGTTCAG GTATCCTGCT GGCCGGTTCA AATTATACCT TAAACAATCA ATCCTCTGGA
AATCCTCTGG ATGATGGTAT TTTAACAGCA TATGAAGCGA TGCAGCTTAA TCTGGACCGC
ACCGATCTGG TGATTCTGTC TGCATGTGAA ACAGGCCTGG GTGAAGTGAT GAACAGTGAA
GGCGTGATTG GTTTGCAGCG TTCCTTTATG CTTGCGGGAG CAGACAACAT GCTGATGAGT
TTGTGGCAGG TGAATGATGA AGGAACACAA TCGCTGATGA GCAATTTCTA TAAATATTGG
GTCGTGGATA GAAATTCAGG GATAGCATTG CGCAGAGCCC AGTTAGATTT AATGAAAACA
CACCCGTCTC CGTATTACTG GGCGCCATTT GTTTATATTC GATAA
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| Protein sequence | MFSKILLFVL LFASAFFASG QQDISQQRAE MEALVSSGNY TAALKKALEI KKITEKKFGS
SHVEHAQSVL DVAVVYYYLF DCSNSELNIE AAKNIYAKTS GIKSYAYANA LQNQSYIFLT
CNKPEKAEEA ATQAIKIIQE NVSDSTRLLA TLYSDLGYVQ TTLGKIPDAK RNYDKSYSLM
NRYGFIHGEE YAFLLNNIAS FYHDLSDYTS AKKYYDESLL IHKKVFGSDA PEYATVLNNE
GILDLDFGYY EEGAQLIFKA AAIYKNTKGE KSLEYARSMN DIGNVYDKES DYKNAEQYYL
KALQLKKELG VEGNVTYWNT LNNLALLYAR LGNYSKAIST MQGQLELIKK YGGQTQPEYG
NYLNSMGAIY EQNNDYTNAS VYFNQALQFY KTYYGVSDPN YSRVLNNLGL LAVKQGKTQL
AFQYYNQSLA ILERDTIANQ IEIADTYNNM GELHSETGDF TSASVEFQKA LRIYDSVLGK
KHPSYWITYS NDALLQYRSG NTNKAIQQTR QVLDMNLSMV YDNFTFLSEA EKLKYWNKTY
DQFEFYNSMC VKEYTAIPEL IGSMYNYSLA TKSLVFNYTN QLKSKILQHG NKELLKEYVA
WENKKQLLAT YYNFSKQQLA TNNINLPALE SEVNLMEKNI VLQSAAFKIA RDVRNITWKD
IQAKLKENEA AVQMLRVKLY NNVWTDSIVY VALILTKETV DKPIMVVLKN GNKLEKKYYN
GFFNAIQFDQ VTDLYYTVFW KEIDQHILNK TTVYVSPAGV YNKISLPALK LPDGSYLLEK
RNIQIVPVMR SIAAYAPSNV RQSDKAFLFG HPNYNYTLPA DTAATRSVEA VQPLADELRG
TELADLPGTK IEVDNISGIL NAYGIPVNTY TGNNASETEI KKLVNPSVLH IATHGYFIKN
AEIEEAGTAT TATNYKENPW LRSGILLAGS NYTLNNQSSG NPLDDGILTA YEAMQLNLDR
TDLVILSACE TGLGEVMNSE GVIGLQRSFM LAGADNMLMS LWQVNDEGTQ SLMSNFYKYW
VVDRNSGIAL RRAQLDLMKT HPSPYYWAPF VYIR
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