| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2936 |
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| Symbol | hsdR |
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| ID | 4185577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3354118 |
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| End bp | 3357222 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638072923 |
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| Product | restriction enzyme type I helicase subunit; type I restriction enzyme HsdR |
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| Protein accession | YP_679520 |
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| Protein GI | 110639311 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.101388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCAC AAACCAACGA ACAAGCCTTA GAATCTTCCA TAGAAAAGTG CTTAACGGGT
ACAAGTCTGG AACAATTGAA GGAACAAAAA GTTTCTCTGC ATATTGCAAA CGAGCGCAGA
GAATTGTACC GTGCTGGTAA TGGCTATTAT ATTGGCTCCC CCGAAGATTT TAATGCACAG
TTTGCTCTCG ATGAAAAACG CTTTTGGGAT TTTTTGGAAA CTACCCAACA AGAAGAGTTG
AGCAAACTGC AAAAGCAAAG CGATTGGAAA CTTAAGATTA TAGAGCGCCT TAACTATACT
GTAAAGAAGT ATGGCATTCT GCGTTTGTTT CGCAAAGGTC TGGATATAGA CGATGCACAC
TTTACCTTAT TGTATCCATT ACCTTTAGCC AGCAGCAGCG AGACCGTACG CACAAATTTT
GAAAGCAATC AATTCAGTGT TACGCGTCAG CTTCGGTATT CACTCATCAA TACCAAAGAA
GAAATAGACA TGGTACTTTT TGTAAACGGC TTGCCCTTTG CAACCATGGA ATTAAAAAAC
CATTGGACCG GACAGAATGC AAAAGTACAC GGGCAAAATC AATATAAGAC CAAACGTGAC
ATTAATCAAC CGCTGCTCAA CTTCGGTCGC TGCATTGTAC ACTTTGCCGT AGATACCGAT
GAAGCATACA TGACCACCCG ATTAAATGGA AATGATACCT TCTTTCTTCC ATTCAATTTA
GGACAACGGG AACCCTTGTT TGGTAAAGGC AATCCGGTAA ATCCATTTGG TCATAAGACA
TCCTATATGT GGGAAGAAAT ATTTACCCGG AAAAGCATTG CCAATATCAT TCAGCATTTT
GTCCGTTTCG ATGGCAAAGA AACCGATCCG CTAAGTAAAA AGACTTTGTA TTTCCCACGC
TATCATCAAT TGGATGTGGT GCGTAAACTT GTAGACGATG CTAGTAAAAA AGGCGTAGGA
CAAACGTATT TAATACAACA CTCTGCAGGT TCGGGCAAAT CCAATTCCAT TACCTGGGCA
GCCTATCAAC TGATCGAAAC CTATCCGGAA AGCGATAACT TGCCGGGCAG CAAAGGTGTC
TCAAATCCAT TGTTTGATTC CGTAATCGTT GTAACCGATC GCAGGTTGTT AGACAAACAG
ATTCGCGAAA ACATCAAAGA GTTTTCGGAA GTAAAAAATA TTGTTGCGCC TGCTTATTCA
TCTAAAGAGT TAAAAGAAAG TTTGGAGAGC GGTAAAAAAA TTATCATTAC CACCATACAA
AAATTCCCCT TCATTGTAGA CGGCATTGCC GATTTAAGTG ATAAACGTTT TGCTGTTATT
ATAGATGAAG CACACAGCAG TCAGAGTGGC ACTTCGGCAG GCACCATGAA TCAGGTCATG
GGAAATGCTG CAGGGGATGC TACTGAAGAC GAAGAAATAG ATCCACAAGA TAAAATACTG
GAGGCCATGC GCGCACGTAA GATGCGTGGC AATGCATCGT ATCTGGCTTT TACGGCTACG
CCTAAAAACA ATACGCTTGA GCGCTTTGGT GTAAAACAGG AAGATGGAAA GTATAAACCT
TTTCATTTGT ATTCCATGAA ACAAGCCATA GAAGAAGGTT TTATCCTGGA TGTGCTTGCC
AATTATACTA CATACAAAAG CTATTACGAA ATTGAAAAAT CCATTGAGGA TAATCCCTTA
TTCGAAACGG TAAAAGCACA GAAGAAATTA CGTACCTACG TAGAGCAGAA CAAACAAACC
ATTGCAACCA AAGCAGATAT TATGCTTGAC CATTTCATGA CGAAATTGGT TAATACCAAA
AGGCTGAAAG GAAAGGCAAA GGCAATGGTT GCAACACAAA GTATTGAGTC TGCTATCAAC
TATTATTTTG CCTTAAAGAA ACTGTTAGAC GAACAAGGCA ATCCATTCAA AATAGCCATT
GCTTTTTCAG GCGTTAAAAA AATAAAAGGC ATTGAATACA CCGAAGACAG TCTGAATGAT
TTTCCTGCAC ACCTGGATAC AGCAAAACCA AGTGATCCCG GATATATCAG CGATAAAATT
GCACGTTTCG TAAATATGGA TGAATACCGC ATGTTGGTTG TGGCAAACAA ATACCTTACG
GGCTATGACC AGCCTAAGCT TACTGCTATG TACGTTGATA AGAAACTACA AGGAGTCATT
GCCGTGCAGG CCTTATCCCG TTTGAATCGT TCGGCAGATA AGCTCGGCAA GAAAACAGAA
GATTTATTCA TACTCGATTT TTACAATACT ACTGAAGATA TTAAGAAAGC ATTCGATCCA
TTTTATACCG CAACATCGTT GAGCAAAGCA ACCGACATAA ATGTGTTGCA TGAATTAAAA
TCTAATCTGG ATGATACAGG GGTATATGAA TGGAGTGAAG TAGAAGATTT TGTAGAGAAG
TATTTTAAGG GGGTAAATGC ACAAGAGCTT AGTCCCATTG TTGAGGTTGC AGCAGAACGT
TTTAATGTAA CCTTAGAATT AGATGATAAG GCGAAGGCCG ATTATAAAAT TAAAGCAAAA
CACTTTGTAA AGATCTATGG ACAAATGGCT TCTATTATGC ACTATGAAGT GCAGGCTTGG
GAAAAGTTGT TTTGGTTTTT GAAATTTTTA ATTCCTAAAC TCATTATTGT AGACAATGCA
AGTGATGTCT TGGATGGCTT GCTGAATTCT GTTGATCTTT CAACCTATGG TTTAGAACGA
GTGAAATTAA ATACAACGAT CGTACTTGAC GCTGCTGAAA CAGAAGTTGA TCCACAAAAT
CCCAATCCAA GAGGCGCACA TGGCGGCGAT TCGGAAGAAG ACGAACTAGA CTTAATTATT
AAAAGCTTTA ACGAACGTTG GTTTCAGGGC TGGGATGCTA CGCCTGATCA ACAGCGAGCA
AAATTTGTTG TCATCGCACA GCGAATGCAA GCCCATTCTG ATTACAATGA GAAATATGCA
GAGAATTCAG ACATACAAAA CCGAGCTATT GCATTCGCAA AAATAATTGA TGACGTAATG
GGTAAGCAGC GCAAAACAGA TATGGACCTT TATCGTTTAT ATTCTCAAGA CGAAGGTTTT
AAAATAGCGA TGCAGGATAC GATTAAACGG ATATTGAGAA ATTAG
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| Protein sequence | MPSQTNEQAL ESSIEKCLTG TSLEQLKEQK VSLHIANERR ELYRAGNGYY IGSPEDFNAQ
FALDEKRFWD FLETTQQEEL SKLQKQSDWK LKIIERLNYT VKKYGILRLF RKGLDIDDAH
FTLLYPLPLA SSSETVRTNF ESNQFSVTRQ LRYSLINTKE EIDMVLFVNG LPFATMELKN
HWTGQNAKVH GQNQYKTKRD INQPLLNFGR CIVHFAVDTD EAYMTTRLNG NDTFFLPFNL
GQREPLFGKG NPVNPFGHKT SYMWEEIFTR KSIANIIQHF VRFDGKETDP LSKKTLYFPR
YHQLDVVRKL VDDASKKGVG QTYLIQHSAG SGKSNSITWA AYQLIETYPE SDNLPGSKGV
SNPLFDSVIV VTDRRLLDKQ IRENIKEFSE VKNIVAPAYS SKELKESLES GKKIIITTIQ
KFPFIVDGIA DLSDKRFAVI IDEAHSSQSG TSAGTMNQVM GNAAGDATED EEIDPQDKIL
EAMRARKMRG NASYLAFTAT PKNNTLERFG VKQEDGKYKP FHLYSMKQAI EEGFILDVLA
NYTTYKSYYE IEKSIEDNPL FETVKAQKKL RTYVEQNKQT IATKADIMLD HFMTKLVNTK
RLKGKAKAMV ATQSIESAIN YYFALKKLLD EQGNPFKIAI AFSGVKKIKG IEYTEDSLND
FPAHLDTAKP SDPGYISDKI ARFVNMDEYR MLVVANKYLT GYDQPKLTAM YVDKKLQGVI
AVQALSRLNR SADKLGKKTE DLFILDFYNT TEDIKKAFDP FYTATSLSKA TDINVLHELK
SNLDDTGVYE WSEVEDFVEK YFKGVNAQEL SPIVEVAAER FNVTLELDDK AKADYKIKAK
HFVKIYGQMA SIMHYEVQAW EKLFWFLKFL IPKLIIVDNA SDVLDGLLNS VDLSTYGLER
VKLNTTIVLD AAETEVDPQN PNPRGAHGGD SEEDELDLII KSFNERWFQG WDATPDQQRA
KFVVIAQRMQ AHSDYNEKYA ENSDIQNRAI AFAKIIDDVM GKQRKTDMDL YRLYSQDEGF
KIAMQDTIKR ILRN
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