Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2895 |
Symbol | |
ID | 4185067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 3311131 |
End bp | 3315105 |
Gene Length | 3975 bp |
Protein Length | 1324 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638072884 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_679483 |
Protein GI | 110639274 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000343468 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0609683 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATTCATA ATGCAGCTAC TATGGAAGAA ATTGAATTTT TAAAAAAATC GCTCCAAGAG GAGATAATAT CTAGGAAACA GCTTGAAATA GAGCTTGAGA AAAACAAGTT AGAAATAGAA AAACTGAAGA AGAAGTTTAG TAATTCACAT AAAGAAATAT TAGAGAATTA TATAAGAAAA GAACAAGACT TATTATCCAA TTCGTCTCGC TTGTCTTCTT TAATTGTGAA CCTTGATTCT GCAATTTTAT TAGAGGATGA AAACCGAAAA ATTGTTTTAG TAAATCAAAA GTTTTGTGAC ATTTTTGGTA TTCCACTATC ACCTCAGGAA TTGATTGGAA CAGACTGCTC CAATTCTGCA CAACAATCAA AAATAAAATT TAAAAATCCT GACCAATTCA TCTCTAGAAT TGAAGAGTTA CTAGAAAATA AAAAAAAAGT ACTTTCTGAT GAGCTTCAAT TAATTGATGG AAAAATATTA AAACGAGACT TCATACCTGT TTACCATAAT AATGAATATC TCGGACACTT ATGGAATTAT GAAGATCTAA CGAATTACAT TAATGTAAAA AAGAAAATTG AAAGTTTATC CCGTTTCCCG AAAGAAAGCC CAAACCCAAT CCTCCGCTGC TCCGCTGATG GAATGGTAAT TTATGCAAAC GCTGCTGCAA AACCTTTCGT CTCTGTTTTA TCAACTACAA AATACAATTC CAACAATAAT GTCACTTATG ATTCTCTCGT ATCAAATGTA AAAGCAAGTT TTAAAACCCG GATGCTTTTA AAAAATGAAA TCCGTATAAA AGATAGAACG TATAATGTTT CTTATGTTCC GGTAGAACAT GAAGACTACG TTAATATCTA TGCAACTGAT ATTACCAGCA CGAAAGAATC TGAAGAAAAA ATTTACTTGC TAAAAGAATT GCTAAATCAA CTCGATGAAT TTATCCAGGT AATTGACAAA GAAGGAAATT TTGTTTTTAT TAATGAAAGC AGTGCGAATA GATTTCAACG AACAATTGAA GAATTTGAAA CATTGAACAT AAAAAATATT GTTCCTTCTT TTTACAACAA TATGACCTGG GAAGAACAAT TTGATTTTTT TAAACAAAAA CAAAATTTTT TGCTTGAATC AACCCATACC AAACCTGATA AAACTTCTTA TCCCATTGAA TCAAGTGTTA AGTATACAAC TGTTCATGAG AAAGAATACA TCATTTCTTT CTCAAAAGAC ATTAGTGAAA GAAAACGCAC TGAACAAGCA CTGCAAGATC AGAAACAATT CTATGAAGAT ATTTTAAATA ACATTCCGTC TGACATTGCT GTGTTTAACA CAAATTACCA ATATCTATAT GTTAATCCTG CTGCAATTAA AGATGAGGAA ACACGCAAAT GGATTATTGG AAAGACAGAT CTGGATTATT GCAGATATAG AGGAAAAGAT GATTCCTTAG CGATCATGCG TCGAAAAAAC CATGATATTC TTCATGAATT TAAAAAACCT ATTGAGTGGG AAGATGTTTT TACCGATAAA GACGGAAATG TCAGTTATGT ATTAAGAAAA TTCCACCCTG TTTTGGATGA AAATGACAAT ATCAAAATTA TCATTGGGAA TGGAATAAAC ATAACTGAAA TAAAACAAGT GCAAGAAAAA CTTGCTAAGA GCGAAGAGTT GTATAGACTC GTTATTCATG CAGCAAACGA TGGAATCTGG GATTGGGATA TCGCTTCCGG AAGTTTATAC CTCAGTGAGC GTTGGAAATC TATGCTAGGC TATACGGATG AAACATTAGC AAATCATATA TCTTCCTGGG AAAAAACAAT GCATCCGGAT GATCTATCAA TAGCAAAAGA AATTTTACAG AACCATTTCG AAAAACGAAA ACCATATAAC TATACATTAA GATATTTACA TGTTGATGGT TCTATTCGTT GGATCATGTG CAGAGGTTTT GCAATTCGAA ACAGAAAAGG AGAACCATAT AGAATGGTTG GTAGCTGCAC AGATGTGACA GATACACAAA TAGCAGAAGA AAAATTAAAA GAAAATGAAG AAAAACTACA AGCAATTTTC AATCACTCTC ATGATGCAAA ATTTTTAGTT GATCCCTGCA CAAATAAAAT TATTGAGTTT AATAAACGAA CTCTTGAACT ATTTGAAACG GACAAACCTG ATACATTATA TACTATTCCT CTTACATCTC TTAGAAAATA TCCACTAACT GACGCTGAAT TGGCAGACAC TCAGAACCAG TTTAAACAAC TTGGATATTG GAATCAGGAA GTCCTTTATA TAACACAAAA GAAAAATGAA TTTTGGGGAA ACATTGTTGC TAAAACAATA TTTATTAATA AGAAAGAAGT AATTCTTGTC CGAATTACAG ATATATCTGA AAACAAAAAA ATTGAGCAGG AACTGATCAA AGCCAAGCAA ATTGCTGAAG AATCAACAAA AGCGAAAGAA ATGTTCTTAG CTAATATGAG TCATGAAATT CGTACTCCAA TGAATGGTAT ACTTGGTATG GCTGAACTGA TTTCGCGAAC ATCCTTAGAT GTTACACAAA AGAAACATGT TCAGCTGATT AAAAATAGTG CGGATAATTT ATTGATTATT ATTAATGACA TTTTAGATAT AGCAAAAATT GAATCCGGAA AACTAACCAT TGAACAAATT CCATTTGATA TTTGTGAAGT AATAAAAAGT GCTATTCAGA CCTTAACCTA CAAAGCAGAA GAAAAAGGTA TTGATTTGAT TATACATCCA ATTAAACTCG ACCATAGAGT TGTTATTGGC GATCCATTCA GACTTACACA AGCACTTTTG AATTTAATTA ACAATGCGAT TAAATTTACC GAAAACGGTT CCGTAGAAAT CAGTGGACGC ATTCCGCATT CCAGTTCAAC GGACATCACA TTTGAATTTA CCGTTAAAGA TACGGGGATA GGTATACCTC AGGAAAAATT AGACAGCATT TTTGAAGGAT TTACTCAAGC ATCCCCTGAT ACATCCAGAA AATATGGAGG AACGGGACTT GGACTTACTA TCAGTAAGAA CTTAATTCAG ATGCAAGGTG GTAACATTTG GGTTGAAAGC GTTGTTGGCA AAGGAAGTAA ATTTATTTTT TCAATCACAT ATAAAAAAGG TGATCTGTTA GATGTCTCTC CAAACAATAA AAATAAAATT AACCTATATC AACTTCATGA TTTAAAAGTA TTATTAGCTG AAGACAATGA AGTCAATCAA TATTTTGCAA AAACATTGAT GGATGAAATT GGTGTAAAGG TAGATGTTGC TAATAATGGC ATTGAAGCCT TTCAGTTCTT TGAACAAAAT GAATATGACA TTATTTTAAT GGACATACAA ATGCCGTATA TGGGGGGTAT TGAGACAACA TCAAAAATCA GATCGCACGC AAATAAAACG AAAGCAAAAA TTCCAATTAT TGCTTTAACT GCAAATGCAC TTGTTGGTGA TTCTGAAAAA TATATTGAAG CCGGAATGAG TGATTATATT TCTAAACCAT TTGATCGGGA AACACTATTT AGAAAATTAC AACTACATGC AGGTTCAAAC AAAAATATCT TTCAAGATGC AAAGAACATC CATTTATTTC AATCCGATAC CAATGACGCA TATCTACCAA ACTATAGTCA TTTAGAAAAA AACTTTCAAA ATAACACCGT TTTTCTCAAA AAAATATTTA CGTTATTCAT TGAATCAACA CCAGAAATTG TAAACGAATT AAAATTATTT TCTGAAGGTA AGGATTATGA AAAACTACAA GCAACAGCAC ACAAGTTAAA AGCCAGCGTT GATGCATTCA AAATTGTAGC ATTACATCAA ACAATAAGAA ATATCGAAAA ATTCGCAGCA AACAAAACCA ATCTGGATGA AATACCTGAT TTAGTTAAAT CTACAGATGA TATACTTAAA ATTGCTCAAG AAGATATCAC AAAAAAATTA AAACAAATAG AATAA
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Protein sequence | MIHNAATMEE IEFLKKSLQE EIISRKQLEI ELEKNKLEIE KLKKKFSNSH KEILENYIRK EQDLLSNSSR LSSLIVNLDS AILLEDENRK IVLVNQKFCD IFGIPLSPQE LIGTDCSNSA QQSKIKFKNP DQFISRIEEL LENKKKVLSD ELQLIDGKIL KRDFIPVYHN NEYLGHLWNY EDLTNYINVK KKIESLSRFP KESPNPILRC SADGMVIYAN AAAKPFVSVL STTKYNSNNN VTYDSLVSNV KASFKTRMLL KNEIRIKDRT YNVSYVPVEH EDYVNIYATD ITSTKESEEK IYLLKELLNQ LDEFIQVIDK EGNFVFINES SANRFQRTIE EFETLNIKNI VPSFYNNMTW EEQFDFFKQK QNFLLESTHT KPDKTSYPIE SSVKYTTVHE KEYIISFSKD ISERKRTEQA LQDQKQFYED ILNNIPSDIA VFNTNYQYLY VNPAAIKDEE TRKWIIGKTD LDYCRYRGKD DSLAIMRRKN HDILHEFKKP IEWEDVFTDK DGNVSYVLRK FHPVLDENDN IKIIIGNGIN ITEIKQVQEK LAKSEELYRL VIHAANDGIW DWDIASGSLY LSERWKSMLG YTDETLANHI SSWEKTMHPD DLSIAKEILQ NHFEKRKPYN YTLRYLHVDG SIRWIMCRGF AIRNRKGEPY RMVGSCTDVT DTQIAEEKLK ENEEKLQAIF NHSHDAKFLV DPCTNKIIEF NKRTLELFET DKPDTLYTIP LTSLRKYPLT DAELADTQNQ FKQLGYWNQE VLYITQKKNE FWGNIVAKTI FINKKEVILV RITDISENKK IEQELIKAKQ IAEESTKAKE MFLANMSHEI RTPMNGILGM AELISRTSLD VTQKKHVQLI KNSADNLLII INDILDIAKI ESGKLTIEQI PFDICEVIKS AIQTLTYKAE EKGIDLIIHP IKLDHRVVIG DPFRLTQALL NLINNAIKFT ENGSVEISGR IPHSSSTDIT FEFTVKDTGI GIPQEKLDSI FEGFTQASPD TSRKYGGTGL GLTISKNLIQ MQGGNIWVES VVGKGSKFIF SITYKKGDLL DVSPNNKNKI NLYQLHDLKV LLAEDNEVNQ YFAKTLMDEI GVKVDVANNG IEAFQFFEQN EYDIILMDIQ MPYMGGIETT SKIRSHANKT KAKIPIIALT ANALVGDSEK YIEAGMSDYI SKPFDRETLF RKLQLHAGSN KNIFQDAKNI HLFQSDTNDA YLPNYSHLEK NFQNNTVFLK KIFTLFIEST PEIVNELKLF SEGKDYEKLQ ATAHKLKASV DAFKIVALHQ TIRNIEKFAA NKTNLDEIPD LVKSTDDILK IAQEDITKKL KQIE
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