Gene CHU_2886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2886 
Symbol 
ID4184477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3300950 
End bp3302194 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content36% 
IMG OID638072876 
ProductO-antigen ligase-like 
Protein accessionYP_679475 
Protein GI110639266 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000199013 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.062273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATATTTA TATTGTTTAT GAGATTGGTT GGTTTCTCTA CCATCAGCGA CAGTGCAGCC 
ATAGCCAAAG TGCTTAAAAC AGGAATTGGG TTGATAATGA CAACCATCAC GATATTCATT
TTTTATAGAC TCGTAAAAAA AGGGTTTATA CCATCCTTTA GATATCAGCA TGTATTAACA
ATTCTATTTT ATTGCCTTTA TCTTTCTTTA GGTCTTATTT CGCTTGTATG GACTTCAGAT
GTTGCCGTAT CCGCACTACA AATTACGCGA GACATTGAAA TGCTGGTTTT TTCTTTTTTC
TTTATTTATA TCATTGTAAT GTTAAATCAT TACTATCCTG AAGATTTCAT TAGGATTAGC
GCCATTATGG GGCCGGCGAT TGTATTGAAT CTTAGCATCT TTTTAATCGG AAACATTGTA
GCTCCGGATA TTTTTATCCG AAAAACACAT GGTGGCGAAG TAAGCAGATT GGGGGGACAG
ATGATGAATC CGAATGAGCT TGGCATGTTG TGCGGTGTAG CTATTGCCTG TTGTTTTGCT
GAATTAAAAC AAAAAGCCAA TCTGATCTGG AATACAATCA TGATATTGAT TGCATTGTAT
GCCTTATTCA TAACAGGATC CAGGTCTTCC ATGATTGGTT TCTTTTTAGT TGCCATGTAT
TATGTGATCA TTTCAAAAAG TTATACATTG AAAGCAACAG TAGTTGCTGT TGGCATTCTA
ATCATGCCAA TTGTTGTAAA TGTAATTTTT TTAAAGGAAG GTGCTAAAAC ATCCGGTACT
TCAGGCGCGG AAGAAGTGCT ATCCATGACT GGAAGATTAC CGTTTTGGCA GGCTCTACTT
TCAGAAGGAT TACCACGTGA ACCATTGCTA GGGTTTGGAT TTATGCGCAT CAATTACACC
ACATATTTTC AGGGTGCCCA CACCTACCCT GCTGCGATGA CGCACAATAC ATTTATTCAG
GTACTGATGA ATTTGGGGCT CATTGGCTTT TTTATTGTAT TGATTCAAAT GGTTTTTATG
GTACGTACAA TCATAAAAGT TGAAGACAAA GCACAAAAAG AATTGATCTT TACATTACTG
ATGCCCATAC TTATTAATTC TTTCACTGAA TTTGGAATAT GGGGAGAGGT TAATTACTCC
ATTCTTTTTT ATCAAATCCT TATTCTAACT ATGGTAGTTA GATACAAAAA CCGATTCAGC
ATTTTAGAAA AAATTATTCA AAAAAAGAAG TTAGGAATAG GTTAA
 
Protein sequence
MIFILFMRLV GFSTISDSAA IAKVLKTGIG LIMTTITIFI FYRLVKKGFI PSFRYQHVLT 
ILFYCLYLSL GLISLVWTSD VAVSALQITR DIEMLVFSFF FIYIIVMLNH YYPEDFIRIS
AIMGPAIVLN LSIFLIGNIV APDIFIRKTH GGEVSRLGGQ MMNPNELGML CGVAIACCFA
ELKQKANLIW NTIMILIALY ALFITGSRSS MIGFFLVAMY YVIISKSYTL KATVVAVGIL
IMPIVVNVIF LKEGAKTSGT SGAEEVLSMT GRLPFWQALL SEGLPREPLL GFGFMRINYT
TYFQGAHTYP AAMTHNTFIQ VLMNLGLIGF FIVLIQMVFM VRTIIKVEDK AQKELIFTLL
MPILINSFTE FGIWGEVNYS ILFYQILILT MVVRYKNRFS ILEKIIQKKK LGIG