Gene CHU_2872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2872 
Symbol 
ID4183728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3285561 
End bp3286100 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content44% 
IMG OID638072862 
Productmicrocystin dependent 
Protein accessionYP_679461 
Protein GI110639252 
COG category[S] Function unknown 
COG ID[COG4675] Microcystin-dependent protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000497886 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGAGT ATTTAGCAAT TATTAAAATT TTTGGCGGCA ATTTTGCACC CCGCGGATGG 
GCATTATGTC AGGGACAAAT TTTAAGCATC GCACAGAACA CCGCATTATT TTCACTGATC
GGAACTACGT ATGGCGGCAA TGGACAAACA ACTTTTGCAT TGCCTGATCT GAGAGGCCGT
GCACCAATCG GCTGGGGACA AGGTCCGGGT CTTTCTGCGT ATAACATTGG CCAGGTATCA
GGTACCGAAA CCGTATCTAT TTTATTAAAT AACATGCCTG CGCACAATCA CGCTATTGGC
GGTACAGTAC AGTTACCCGT AAACGATAGC AATGCTGATG CAGACGGTCC TATCGGGGCT
TATTTGGGTA CACCAGGCAC AGCTATTTAC AGTTCAACAA CAAATGCTGT AGCTGCAAAT
CTGAATACAA ATCTTACAAC TGCTGTTGTA GGGAGTAATA ACCCATTGGG CATTTTACAA
CCGGTTTTAG CAGTGAGTTA TATCATTTGT ACACAAGGAA TTTTCCCTTC CAGAAACTAA
 
Protein sequence
MDEYLAIIKI FGGNFAPRGW ALCQGQILSI AQNTALFSLI GTTYGGNGQT TFALPDLRGR 
APIGWGQGPG LSAYNIGQVS GTETVSILLN NMPAHNHAIG GTVQLPVNDS NADADGPIGA
YLGTPGTAIY SSTTNAVAAN LNTNLTTAVV GSNNPLGILQ PVLAVSYIIC TQGIFPSRN