| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2860 |
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| Symbol | acrB |
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| ID | 4183717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 3266466 |
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| End bp | 3269633 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638072851 |
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| Product | acridine efflux pump |
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| Protein accession | YP_679450 |
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| Protein GI | 110639241 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00427277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0312794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCAAC AATTTATACG TAGACCAGCC CTTGCGATTG TAATTTCGCT TGTGATTATG
TTCATGGGTT TGCTGGCAAT CAAAACGCTC CCTAAATCAC AGTTCCCGGA TATTGCGCCA
CCTATGATTG TGGTATATGC ATCGTATCCG GGAGCCAGTT CAACGGTACT TACAAATTCT
GTACTTATTC CTTTAGAACA GGCCATCAAC GGTGTGCCGG GCATGAAATA CATGTTCACC
ACCGGTGCCA GTTCAGGTGA AGCCAACTTA CAGATTGTAT TCAACCTGGG TACCGATCCC
AATCAGGCAC TTGTAAACGT ACAGAACCGT ATTGAGCAGA TGAAGATGCG TCTTCCGCCG
CTTGTACAGC TTGAAGGTAT TGTTGTACAG CGTTTGATGC CAAACATGCT TATGTATGTG
AACGTGTATG GCAGAGATAC TTCTAAAGTC GATATGAAGT ATATCTTCAA CTATACGTAC
ATCAACATGC TTTCGGAATT ACAACGTGTG GAAGGTGTAG GTCTTGCCCG TATCCTTGGT
AGCCGTCAGT ATTCCATGCG TATCTGGCTG AATCCGGATC GGATGCGTGC TTACAATATT
TCATCCGATG AAGTTATGAA AGCCCTGGAT GAACAAAGTA TCATTGGTTC TCCGGGAAGG
ATTGGCAGAG CAGACAGTAA AGCATCAGAA GCCATTGAAT ATGTATTAAC CTATCCCGGC
CGATACGATA AAGAATCTCA ATACAACGAT GTCATCATCC GGGCTACACC GGAAGGTGAA
GTTTTACGAC TGAAAGATGT AGCGACCGTT GAGTTGGGTA GTGAGTATTA TGATATTTAT
TCGAATAAAG ATGAATTCCC TTCTGCCGCT ATTACAATTA ACCAGGCGGC CGGAAGTAAT
GCAACAGAGG TAATTGAAAA CCTTAAAGTA AAACTGGAAG AACTTAAAAA GTCTTTCCCG
CCGGGCATTG AATACGAAAT CAACTATGAC GTTTCAACAT TCCTGGATGC CTCAACTGAA
GAAGTAGTAC ATACCTTACG GGATGCCTTT ATTCTTGTAT CAATTGTGGT TTTCATCTTC
CTGGGCGACT GGAGATCTAC CATCATTCCG GTATTGGCCG TTCCCGTATC GTTGATCGGT
GCCTTCTTTA TGATGCAGCT GTTTGGTCTG AACATCAACC TTATTACGCT CTTTGCCCTT
GTACTTGCTA TCGGTATTGT GGTGGATGAT GCGATTGTTG TGGTAGAAGC CGTGCACGCA
AAAATGGAAG AAAAGCATTG TTCTCCTTAT ATAGCTGTAA AAGAAGTATT GGGTGAGATC
AGTGGCGCCA TTATCGCCAT TACCTTATTG ATGACATCAG TATTCGTACC GGTAGCGTTT
ATGACCGGTC CGGTTGGGAT CTTCTTCAGA CAGTTCGCCA TCACCATGGC ATCTTCTATC
GTTATCTCAG GTGTTGTTGC CTTAACGCTT ACACCGGTAT TGTGTGCGAT GATCTTAAAG
AATACCCACG GCCAGCCAAG AAAGAAAACA ATGCTGAACA GATTCATTGA CAGCTTCAAC
AGGGTCTTTG AAAAACTGAC AGGCAAATAC GTTGGCTTAT TGCGCGTCAT TGCGAACAGA
AAAACTGTAA CCTTCGGTTT GCTGATCACT TTCTCTGTGT TAACATTTGG TATCACCCGT
ATTCTTCCTT CCGGTTTCGT GCCATCCGAA GATCAGGGTA TGATCTACGC GGTTCTTCAG
ACCCCGCCGG GATCAACACT TGAAAGAACC TATGAGGTAA GCAGGCAGTT ACAGGAAGCG
TGTAAAAAAG TGCACGGCGT ACAATCTGTT TCTGCCCTTG CAGGTTATGA GATCTTAACA
CAAGGTAGAG GCTCTAACTC CGGTACCTTG CTGATCAACT TAACGCCATG GAATGAAAGA
CACCACACGG TTGTAGAGAT CACCGAAGAA CTGGAAGAAC TTACCAAAGA CATTCCGGGT
GCAAAGATCG AATTCTTCGG TCCGCCAGCT GTACCGGGTT ATGGTGCTGC CGGTGGTATC
GGTCTGCAAC TACTGGATAA AAATACAGAT ATTGATTACG AACGTTTAGA TGGTGTGAGC
AAGCAGTTCA TGAAAGACCT TGAAAAACGA AAAGAATTAA CTGCCCTGTT CACATTCTAC
AGAACAGATT ACCCGCAATA CGAATTAGAA ATTGATAACA AACTAGCCAT GCAGAAAGGT
GTTTCCATTA AGACAGCAAT GGATAATATC TCTATCATGA TCGGTAGTAC ATACGACATC
GGTTTCATCA AATTCGGCCG TTTCTTTAAA GTGTTCGTAC AGGCAGATCC TTCTTTCAGA
CGGATTCCTA CAGACATCCT GAAACTCTAT GTAAAAAATG ACAAAGGTGA ACAGGTCCCT
TACTCTTCTT TCATGTCTAT CAAAAAAACA CAGGGTATCT ACGAGATCAA CAGATACAAC
ATGTACACGA CCTCTTCTAT CAGATGTTCT CCTGCTGCCG GATACAGCAG CGGTGAAGCA
ATTGAAGCAA TTAAAGAAGT AGCTGCAGAA ACATTACCTA AAGGTTATGA CATTGACTGG
TCAGGCTTGC AGAAAGATGA AGTTGGCCGT GGTAATGAAG CCGTTTACAT TTTCCTTATC
GTATTGGTAT TCGTGTATCT CGTACTTGCT GCACAATATG AAAGTTTCAT TCTTCCGATG
GTTGTAATCT TATCCTTACC AGCCGGTATT TTCGGAGCAT TCTTATTGAT CAAAACTGCC
GGTATGGCAA ACGACATTTA TGGTCAGGTT GCCCTGGTTA TGCTTGTTGG TTTGCTCGGT
AAAAATGCCG TGTTGATTGT TGAATATGCC GTAATGAAAA ACAACGAAGG CTTAAGCGTG
CTGGAATCGG CTATTGAAGG TGCAAAGGCA CGTTTCAGAC CAATCCTTAT GACATCCTTT
GCCTTTATTG CAGGTTTGAT TCCGTTGATT TTCGCGCATG GTCCTGGTGC CATTGGTAAC
AAAACAATCG GAGCGGCCTC TCTTGGAGGT ATGCTATTCG GAACAGTATT CGGTGTAATC
ATTGTACCCG GATTGTATTA CATATTCGGC AGTATTGCTG AAGGACGTAA AATGATTAAA
GATGAAGATT TTGATCCATT AAGCGAAGAC AAAAACCACC ATGTTTAA
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| Protein sequence | MFQQFIRRPA LAIVISLVIM FMGLLAIKTL PKSQFPDIAP PMIVVYASYP GASSTVLTNS
VLIPLEQAIN GVPGMKYMFT TGASSGEANL QIVFNLGTDP NQALVNVQNR IEQMKMRLPP
LVQLEGIVVQ RLMPNMLMYV NVYGRDTSKV DMKYIFNYTY INMLSELQRV EGVGLARILG
SRQYSMRIWL NPDRMRAYNI SSDEVMKALD EQSIIGSPGR IGRADSKASE AIEYVLTYPG
RYDKESQYND VIIRATPEGE VLRLKDVATV ELGSEYYDIY SNKDEFPSAA ITINQAAGSN
ATEVIENLKV KLEELKKSFP PGIEYEINYD VSTFLDASTE EVVHTLRDAF ILVSIVVFIF
LGDWRSTIIP VLAVPVSLIG AFFMMQLFGL NINLITLFAL VLAIGIVVDD AIVVVEAVHA
KMEEKHCSPY IAVKEVLGEI SGAIIAITLL MTSVFVPVAF MTGPVGIFFR QFAITMASSI
VISGVVALTL TPVLCAMILK NTHGQPRKKT MLNRFIDSFN RVFEKLTGKY VGLLRVIANR
KTVTFGLLIT FSVLTFGITR ILPSGFVPSE DQGMIYAVLQ TPPGSTLERT YEVSRQLQEA
CKKVHGVQSV SALAGYEILT QGRGSNSGTL LINLTPWNER HHTVVEITEE LEELTKDIPG
AKIEFFGPPA VPGYGAAGGI GLQLLDKNTD IDYERLDGVS KQFMKDLEKR KELTALFTFY
RTDYPQYELE IDNKLAMQKG VSIKTAMDNI SIMIGSTYDI GFIKFGRFFK VFVQADPSFR
RIPTDILKLY VKNDKGEQVP YSSFMSIKKT QGIYEINRYN MYTTSSIRCS PAAGYSSGEA
IEAIKEVAAE TLPKGYDIDW SGLQKDEVGR GNEAVYIFLI VLVFVYLVLA AQYESFILPM
VVILSLPAGI FGAFLLIKTA GMANDIYGQV ALVMLVGLLG KNAVLIVEYA VMKNNEGLSV
LESAIEGAKA RFRPILMTSF AFIAGLIPLI FAHGPGAIGN KTIGAASLGG MLFGTVFGVI
IVPGLYYIFG SIAEGRKMIK DEDFDPLSED KNHHV
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