| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2842 |
|---|
| Symbol | |
|---|
| ID | 4183408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 3244280 |
|---|
| End bp | 3245449 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638072833 |
|---|
| Product | LysM repeat-containing protein |
|---|
| Protein accession | YP_679432 |
|---|
| Protein GI | 110639223 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1388] FOG: LysM repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTAA GTAAAAAAAT AGTGAACCGT TTTTTTTTAG TAGTAGCCGT ATCATTGTCT
TTGCAATCCA TTTCACAGGC AAGTGTTTGT GATTCTATTG GTGTTGAAAG AAAAGATGGG
AAATTATTTG TACTGCATAG AATTGCCGCT GGCGAAACAC TGTATTCACT TTCCAGAAAA
TACAATGTAT CGGTAGATGA TATTAAGAAA AATAATCCAA CCTGGTCTGA AGGGTTGAAA
GTAGGACAGG TATTGTATGT GCCAAGCAAT GCGGCTGCGC CAACTAAAGC AACAACAACT
GCATCTGCAA CAGGCAAAAC ACACACGGTT GCTGCCGGTG AAACATTGTA CAGCATTGCT
ACGAAATATT CCATTAGTGT AGACGCGCTA AAGAAGGCCA ATCCGGGACT TACTAATTCC
ATCAGCGTTG GTCAGGAACT TAACCTGCCG GGTAAGGCAG GAAGCACTAC TACAACCACA
ACAACGCCAG CAAAACCTGA AACAACCGGA ACTACGCAAA CAACTTCTGT AGTAAAAGAA
ACCGTTGAGC ACAAGGTAGC AGGAGGAGAA ACGTTCTATT CGATTGCAAA AAAATATAAT
GTAAGTGTTG AAGATATTAA AAAAGCGAAC CCGGGTGTCA GTTCACTAAA AGTAGGGCAA
ACGATTAAAA TTTCGAATGC AGAAGTAGCT CAGACAACAA CCACTGCTAC ACCTGTTAAA
CCTGTAACAG CAACTACTAC GACTACCACG GGAACAACAA AACCTGTCAC AACTACAACA
CCGGCAAAAC CGGCAAATGT TGAAGCAGAT ACCATTCAAT TACAGCAGGA CAAGGCACGT
TTGGAAACCA TGCAGACACA AACGCCGGCA ACAAAACCAA CAGTGCCTGC ATCTGACTTT
AAAAAAATCA CTGAAAATGG ATTTGCCGAT CTGATGGCAG ATAACCAGGA TACACCTAAA
TATCTGGCGT ATCATAAAAC AGCGGCAGTA GGTACCATCA TTCAGTTGCT GAATGAATCC
AACGGAATTA AAGTATACGT TCGTGTAGTT GGTAAATTAA CAGATACAGG TACAGATGGG
AAAACCATCA TCCGTATTTC TAAAAAAGCA TATGAACGTT TGGGCGGAAC GGGCTCACGC
TTCTCCGCAA CATTGATGTA CATTCCGTAA
|
|---|
| Protein sequence | MLLSKKIVNR FFLVVAVSLS LQSISQASVC DSIGVERKDG KLFVLHRIAA GETLYSLSRK
YNVSVDDIKK NNPTWSEGLK VGQVLYVPSN AAAPTKATTT ASATGKTHTV AAGETLYSIA
TKYSISVDAL KKANPGLTNS ISVGQELNLP GKAGSTTTTT TTPAKPETTG TTQTTSVVKE
TVEHKVAGGE TFYSIAKKYN VSVEDIKKAN PGVSSLKVGQ TIKISNAEVA QTTTTATPVK
PVTATTTTTT GTTKPVTTTT PAKPANVEAD TIQLQQDKAR LETMQTQTPA TKPTVPASDF
KKITENGFAD LMADNQDTPK YLAYHKTAAV GTIIQLLNES NGIKVYVRVV GKLTDTGTDG
KTIIRISKKA YERLGGTGSR FSATLMYIP
|
|---|
| |