Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2702 |
Symbol | xerD |
ID | 4184570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 3090275 |
End bp | 3091174 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638072693 |
Product | site-specific recombinase |
Protein accession | YP_679295 |
Protein GI | 110639086 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGGA AAATCCTGAT CCGTCAGTTT AGAGATTATT TAAAACTTGA GCGTTCATTA TCCGGTAATT CGGTTGAGGC GTATGAACAT GATGTGATAA AATTCATGCA GTTTCTTGAA CTGACAGAGC CATCTGTCGG TCCCTTACAG GTAAAGGGTA AGCATATTCA GCTTTTTCTG GAATACATTA CAGAGCTTGG TATGTCGGCG TATTCACAGG CACGCATCTT ATCCGGTATC AAATCTTTTT TCAGATTTTT GTTAATGGAA GAAATCAGGG ATGAAGATCC TTCTTCTTTG ATTGACAGTC CCAAGCTTGG GCGAAAGCTT CCGGATACGT TATCTTTTCC GGAGATAGAA CAGATTCTGC TGGCAATAGA TCTTTCAACA CCAGAAGGCA TGCGCAACAG GGCCATGCTT GAAACGTTAT ACAGCTGCGG ACTTCGAGTA TCGGAACTGA CAGACCTGAA AATTTCAAAC CTGTTTTTTG ACGATGGTTT TGTGAAAGTT TTGGGAAAAG GAAATAAGGA ACGCCTTGTG CCTATTGGTC GTGATGCGCG TAAATACATT GGAATGTATC GTAACGAAGT GCGGTGCCAT CTGGACATTG TAAAAGGTGC AGAAAACTAT GTGTTTTTAA ATCGCAGGGG AAATAAGCTT AGCCGGGTAA TGGTATTTAC CATCATCAAA AATTTAGCAG TCAAAATCGG ACTGAAAAAA ACAGTAAGTC CCCATACATT CAGACATTCT TTTGCCACCC ATTTAATTGA AGGTGGGGCA GATTTGCGTG CCGTGCAGGA AATGTTGGGC CACGAATCGA TTACGACCAC AGAAATTTAT ACCCATCTGG ACCGGGATTA TCTGCAACAG ATCATCAAAG ATTTCCACCC CCGTTCGTAG
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Protein sequence | MNWKILIRQF RDYLKLERSL SGNSVEAYEH DVIKFMQFLE LTEPSVGPLQ VKGKHIQLFL EYITELGMSA YSQARILSGI KSFFRFLLME EIRDEDPSSL IDSPKLGRKL PDTLSFPEIE QILLAIDLST PEGMRNRAML ETLYSCGLRV SELTDLKISN LFFDDGFVKV LGKGNKERLV PIGRDARKYI GMYRNEVRCH LDIVKGAENY VFLNRRGNKL SRVMVFTIIK NLAVKIGLKK TVSPHTFRHS FATHLIEGGA DLRAVQEMLG HESITTTEIY THLDRDYLQQ IIKDFHPRS
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