| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2702 |
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| Symbol | xerD |
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| ID | 4184570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3090275 |
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| End bp | 3091174 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638072693 |
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| Product | site-specific recombinase |
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| Protein accession | YP_679295 |
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| Protein GI | 110639086 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTGGA AAATCCTGAT CCGTCAGTTT AGAGATTATT TAAAACTTGA GCGTTCATTA
TCCGGTAATT CGGTTGAGGC GTATGAACAT GATGTGATAA AATTCATGCA GTTTCTTGAA
CTGACAGAGC CATCTGTCGG TCCCTTACAG GTAAAGGGTA AGCATATTCA GCTTTTTCTG
GAATACATTA CAGAGCTTGG TATGTCGGCG TATTCACAGG CACGCATCTT ATCCGGTATC
AAATCTTTTT TCAGATTTTT GTTAATGGAA GAAATCAGGG ATGAAGATCC TTCTTCTTTG
ATTGACAGTC CCAAGCTTGG GCGAAAGCTT CCGGATACGT TATCTTTTCC GGAGATAGAA
CAGATTCTGC TGGCAATAGA TCTTTCAACA CCAGAAGGCA TGCGCAACAG GGCCATGCTT
GAAACGTTAT ACAGCTGCGG ACTTCGAGTA TCGGAACTGA CAGACCTGAA AATTTCAAAC
CTGTTTTTTG ACGATGGTTT TGTGAAAGTT TTGGGAAAAG GAAATAAGGA ACGCCTTGTG
CCTATTGGTC GTGATGCGCG TAAATACATT GGAATGTATC GTAACGAAGT GCGGTGCCAT
CTGGACATTG TAAAAGGTGC AGAAAACTAT GTGTTTTTAA ATCGCAGGGG AAATAAGCTT
AGCCGGGTAA TGGTATTTAC CATCATCAAA AATTTAGCAG TCAAAATCGG ACTGAAAAAA
ACAGTAAGTC CCCATACATT CAGACATTCT TTTGCCACCC ATTTAATTGA AGGTGGGGCA
GATTTGCGTG CCGTGCAGGA AATGTTGGGC CACGAATCGA TTACGACCAC AGAAATTTAT
ACCCATCTGG ACCGGGATTA TCTGCAACAG ATCATCAAAG ATTTCCACCC CCGTTCGTAG
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| Protein sequence | MNWKILIRQF RDYLKLERSL SGNSVEAYEH DVIKFMQFLE LTEPSVGPLQ VKGKHIQLFL
EYITELGMSA YSQARILSGI KSFFRFLLME EIRDEDPSSL IDSPKLGRKL PDTLSFPEIE
QILLAIDLST PEGMRNRAML ETLYSCGLRV SELTDLKISN LFFDDGFVKV LGKGNKERLV
PIGRDARKYI GMYRNEVRCH LDIVKGAENY VFLNRRGNKL SRVMVFTIIK NLAVKIGLKK
TVSPHTFRHS FATHLIEGGA DLRAVQEMLG HESITTTEIY THLDRDYLQQ IIKDFHPRS
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