Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2648 |
Symbol | mutS |
ID | 4184770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 3029080 |
End bp | 3031473 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638072640 |
Product | DNA-mismatch repair protein |
Protein accession | YP_679242 |
Protein GI | 110639033 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1193] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | [TIGR01069] MutS2 family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.270427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATATC CATCTGATCT GGAAAGTAAA ATAGGATTTG ACCAAATCCG TGAATTGCTT AAAACAACAT GCAAAGGATT GGCCGCGATG AATATGCTGG AAGAGTTAAC ACCTTCGTAT GATATTGCAA CAATCGAAAA AGAATTACAG GAGACAGACG AGTTTAAAAA AATTATTGAA TCGGGAATGT TATTTCCCGA TCGTGATTTT GTTGATATAA CGCTGCTGGC TAATAAAATT CAGGTGCAGG GAAATTACCT GGAGATTGAA GAATTATTAC AATGCAAATT GTTTTTAACA ACATTGATTG CCTGCCAGTC TTTTTTCAAA CGTACAGAAA CAGATATTTA TGTACGTTTG CAGGAACGTG CCAATGCCGT TAAAATTGAT TCGTCGTTAT TCAAAGCCAT CAACCGCGTG ATCGATGATC ATGGTGTAAT CCGTGATACG GCTTCCGATG AATTACGCAT GATCCGCGAG GAATACCGGG AAGAACAAAT TAAGCTGCGC AAAGAGGTAG ACCGATTGCT GCGTGTGTTT AAAAAAGAAG GCTATACCGT TGAAGATACC GAAGCAACAA TCCGTTCAGG CCGTTTGGTA TTACCTGTAC TGGCAGAATA TAAACGTAAA GTACAGGGGA TCATTCACGA TGAGTCTGGT ACGGGACAAA CGGTTTTTAT GGAACCTATA TCTTTATTGC CGTACAACAA CAGCGTACGC GAACTGGAGA TCCGTGAACG TAAAGAGATC GTGCGCATAC TCATGCAGCT TACGGATTAT ATCCGTCCGT TTGCAGAGGT GATGCTTGAA GCAAATCAAT TGGTCGGCTG GTTTGATTTT ATCCGTGCAA AAGCAACGTT TGCGTGTTCA GTAAACGGCG TGATGCCTGG TCTGCAGAAA CGGCCGCTCA TTAAATGGCG CAATGCACGC CACCCGTTAT TGTGGCTCAA AAATAAAAAG ATAAAAAAAG AAGTTATGCC GTTGTCTATT CAGGTAGACG AACAAAACCG CATCTTACTT CTTTCAGGTC CGAATGCAGG TGGTAAGTCT GTTTGTATGA AAACACTGGG CTTGCTGCAG TACATGCTGC AATGCGGCCT GCTCATTCCC GTAGAGGAGG GCAGTGTATC CGGCGTGTTT GAAAATTTCT TTATTGATAT CGGTGATTCA CAATCGCTGG ATAATGATCT GAGTACCTAT AGTTCGCACA TTAAGAACCT GACGTTTTTC TTAGAACATG CAGATGCTAA AACTTTATTA CTGATCGATG AATTCGGCAG CGGTACAGAT CCGATGTATG GTTCTGCGAT TGCTGAAGCT GCACTTGAGA AACTGAACGA GCGCAAGTCG ATGGGTATCA TTACCACGCA CTATGCAGGC TTAAAAGCAT TGGCATCTAA AACAGAAGGG TTGATAAATG GTTCCATGCG TTTTGATACA GACAAATTAA TTCCGTTATA CATACTGGAT ATCGGCGTAC CGGGGAGCTC CTTCACACTG GAGATTGCAG AGAAATCCGG TTTGGCCAAA TCACTTATTG AACAGGCACG TACAAAACTG GATCAGGAAC AGGTTGATCT TTCAACCTTA TTAAGAGACA TTGAACGTGA GCGTACAACG CTTCAACAAG AGATTTTATC AGGCAGGGAA CTGAAAGTAA AACATGAAAA ACTTTCAAAG GAGTTTGAAG AAAAGCTAGC GGAGTTACAG GATAAGCGCA GACGTCTGTT GCTTGAAGCG AAGGAAGAAG CATATCGCAT TGTTCAGAAA GCAGACGGAA AAGCAGAAGA GCTGATCCGT TCCATTTCAA ATGCAAAAGA TAAACACGGT GCACAAAAGC ATCGTCAGGA AATACGTGAA GTAGGAAAGG CATTGGAAAA AGAACTGGAA CCTGAAATAA ACATTGCTGA TAATGAATCG ATCCGATACG ATTGGAAAAC AGGTGATATT GTGCGTATAC GCAGCAATGG CGCGGTAGGT AAAATAGAAG CCGTGAAAGG TAAGCTGGCA GAATTATTTA TCGGTGATCT GAAAGCTACG GTTCATTTTT CAGAACTAAG CAGTGCTTCT GCAAAAGAGT TGAAAGCTAA AACAGATGAA CGCAGACCAA AAGCGGGTGG TGTTGATCTG GTACAGAAGC ATCAGATATT TTCAATGCAG CTGGATTTGC GCGGCAAGCG GACCGAAGAA GCCATTGCAT TTACAGACCG CTGGATTAAC GATGCATTTA TTCTGGGTAT TGAAGAAGCA CGGATTCTGC ACGGAAAAGG AGATGGTATA CTACGCAAAA TGCTGCGCGA ACATTTAAAA CAATATAAGC AGATCGTTGC AATGAACGAT GAACACATTG ATAGCGGCGG CGCAGGCATA ACGGTGCTGA GTATGCGGTA TTAA
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Protein sequence | MIYPSDLESK IGFDQIRELL KTTCKGLAAM NMLEELTPSY DIATIEKELQ ETDEFKKIIE SGMLFPDRDF VDITLLANKI QVQGNYLEIE ELLQCKLFLT TLIACQSFFK RTETDIYVRL QERANAVKID SSLFKAINRV IDDHGVIRDT ASDELRMIRE EYREEQIKLR KEVDRLLRVF KKEGYTVEDT EATIRSGRLV LPVLAEYKRK VQGIIHDESG TGQTVFMEPI SLLPYNNSVR ELEIRERKEI VRILMQLTDY IRPFAEVMLE ANQLVGWFDF IRAKATFACS VNGVMPGLQK RPLIKWRNAR HPLLWLKNKK IKKEVMPLSI QVDEQNRILL LSGPNAGGKS VCMKTLGLLQ YMLQCGLLIP VEEGSVSGVF ENFFIDIGDS QSLDNDLSTY SSHIKNLTFF LEHADAKTLL LIDEFGSGTD PMYGSAIAEA ALEKLNERKS MGIITTHYAG LKALASKTEG LINGSMRFDT DKLIPLYILD IGVPGSSFTL EIAEKSGLAK SLIEQARTKL DQEQVDLSTL LRDIERERTT LQQEILSGRE LKVKHEKLSK EFEEKLAELQ DKRRRLLLEA KEEAYRIVQK ADGKAEELIR SISNAKDKHG AQKHRQEIRE VGKALEKELE PEINIADNES IRYDWKTGDI VRIRSNGAVG KIEAVKGKLA ELFIGDLKAT VHFSELSSAS AKELKAKTDE RRPKAGGVDL VQKHQIFSMQ LDLRGKRTEE AIAFTDRWIN DAFILGIEEA RILHGKGDGI LRKMLREHLK QYKQIVAMND EHIDSGGAGI TVLSMRY
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